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Center for Conservation Biology

College of Natural & Agricultural Sciences

Unsplash-White Windmills

Publications


University of California Digital Repository


CCB uses the University of California Digital Repositories exclusively to give public access to its white papers. The eScholarship Database will provide you with the unpublished work that CCB has done.

 
  • 2021
    Acosta-Rangel A, Li R, Mauk P, Santiago L, Lovatt CJ (2021) Effects of temperature, soil moisture and light intensity on the temporal pattern of floral gene expression and flowering of avocado buds (Persea americana cv. Hass). Scientia Horticulturae 280:109940. 
    Albanese D, Coleine C, Rota-Stabelli O, Onofri S, Tringe SG, Stajich JE, Selbmann L, Donati C. Pre-Cambrian roots of novel Antarctic cryptoendolithic bacterial lineages. Microbiome. 2021 Mar 19;9(1):63. doi: 10.1186/s40168-021-01021-0. 
    Alster Charlotte J., S.D. Allison, S.I. Glassman, A.C. Martiny, and K.K. Treseder. 2021. Exploring Trait Trade-Offs for Fungal Decomposers in a Southern California Grassland. Frontiers in Microbiology https://doi.org/10.3389/fmicb.2021.655987
    Andrade, R., Franklin, J., Larsen, K.L., Swan, C., Lerman, S.B., Batemen, H.L., Warren, P.S., York, A., 2021, Predicting the assembly of novel communities in urban ecosystems, Landscape Ecology 36:1-15. https://doi.org/10.1007/s10980-020-01142-1   
    Ávila-Lovera E, Blanco H, Móvil O, Santiago LS, Tezara W (2021) Shade tree species affect gas exchange and hydraulic conductivity of cacao cultivars in an agroforestry system. Tree Physiology 41:240-253. 
    Ávila-Lovera E, Garcillán PP, Silva-Bejarano C, Santiago LS (2020) Functional traits of leaves and photosynthetic stems of species from a sarcocaulescent scrub in the southern Baja California Peninsula. American Journal of Botany 107:1410-1422. 
    Barrows, C.W. and Heacox, S.A. 2021. Forty years after listing, monitoring and status of the endangered Coachella Valley fringe-toed lizard. California Fish and Wildlife Journal. Accepted
    Coleine C, Selbmann L, Pombubpa N, Stajich JE. Amplicon Sequencing of Rock-Inhabiting Microbial Communities from Joshua Tree National Park, USA. Microbiol Resour Announc. 2021 Jun 24;10(25):e0049421. doi: 10.1128/MRA.00494-21. 
    Coleine C, Stajich JE, de Los Ríos A, Selbmann L. Beyond the extremes: Rocks as ultimate refuge for fungi in drylands. Mycologia. 2021 Jan-Feb;113(1):108-133. doi: 10.1080/00275514.2020.1816761. 
    Collins CG, Spasojevic MJ, Alados CL, Aronson EL, Benavides JC, Cannone N, Caviezel C, Grau O, Guo H, Kudo G, Kuhn NJ, Müllerová J, Phillips ML, Pombubpa N, Reverchon F, Shulman HB, Stajich JE, Stokes A, Weber SE, Diez JM. Belowground impacts of alpine woody encroachment are determined by plant traits, local climate, and soil conditions. Glob Chang Biol. 2020 Dec;26(12):7112-7127. doi: 10.1111/gcb.15340. 
    Davison, J., M. Moora, M. Semchenko….S.I.Glassman…and Öpik, M. 2021. Temperature and pH define the realized niche space of arbuscular mycorrhizal fungi. New Phytologist 205 (4): 1619-1631. 
    De Guzman ME, Acosta-Rangel A, Winter K, Meinzer FC, Bonal D, Santiago LS (2021) Hydraulic traits of Neotropical canopy liana and tree species across a broad range of wood density: implications for predicting drought mortality with models. Tree Physiology 41:24-34. 
    Fox, S., B. Sikes, S.P. Brown, C. Cripps, S.I. Glassman, K. Hughes, T. Semenova-Nelson, A. Jumpponen. 2021. Fire as a Driver of Fungal Diversity. Mycologia
    Franklin Rey, S.R., Franklin, J., Rey S.J., 2021, Microplastic pollution on island beaches, Oahu, Hawai`i, PLoS ONE 16(2): e0247224. https://doi.org/10.1371/journal.pone.0247224 
    Gill, N.S., M.G. Turner, C.D. Brown, S.I. Glassman, S.L. Haire, W.D. Hansen, E.R. Pansing, S. B. St. Clair, and D.F. Tomback. 2021. Limitations to propagule dispersal will constrain post-fire recovery of plants and fungi in many western coniferous forests. BioScience. Accepted.
    Hazlehurst, J. A., D. T. Rankin, C. J. Clark, Q. S. McFrederick, and E. E. Wilson-Rankin. 2021. Macroecological patterns of resource use in resident and migratory hummingbirds. Basic and Applied Ecology 10.1016/j.baae.2021.01.003.
    Huang, CU, K. Araujob, J. N. Sánchez, G. Kund, J. Trumble, C. Roper, K. E. Godfrey, and H. Jin. 2021. A stable antimicrobial peptide with dual functions of treating and Sciences.  Vol. 118: e2019628118. 
    Ibsen PC, D Borowy, T Dell, H Greydanus, N Gupta, DM Hondula, T Meixner, MV Santelmann, SA Shiflet, MC Sukop, ML Talal, M Valencia, CM Swan, M Wright, GD Jenerette. 2021. Greater aridity increases the magnitude of urban nighttime vegetation-derived air cooling. Environmental Research Letters 6:034011
    Inman, R., Franklin, J., Esque T., Nussear, K., 2021, Comparing sample bias correction methods for species distribution modeling using virtual species, Ecosphere 12(3): e03422. https://esajournals.onlinelibrary.wiley.com/doi/10.1002/ecs2.3422 
    Livne-Luzon, S., H. Shemesh, Y. Osem, Y. Carmel, H. Migael, S.I. Glassman, T.D. Bruns, and O. Ovadia. 2021. High resilience of the mycorrhizal community to prescribed seasonal burnings in eastern Mediterranean woodlands. Mycorrhiza. 31 (2): 203-216.
    Lofgren LA, Stajich JE. Fungal biodiversity and conservation mycology in light of new technology, big data, and changing attitudes. Curr Biol. 2021 Oct 11;31(19):R1312-R1325. doi: 10.1016/j.cub.2021.06.083. 
    Malar C M, Krüger M, Krüger C, Wang Y, Stajich JE, Keller J, Chen ECH, Yildirir G, Villeneuve-Laroche M, Roux C, Delaux PM, Corradi N. The genome of Geosiphon pyriformis reveals ancestral traits linked to the emergence of the arbuscular mycorrhizal symbiosis. Curr Biol. 2021 Apr 12;31(7):1570-1577.e4. doi: 10.1016/j.cub.2021.01.058
    Meunier F, Verbeeck H, Cowdery B, Schnitzer SA, Smith-Martin CM, Powers JS, Xu X, Slot M, De Deurwaerder HPT, Detto M, Bonal D, Longo M, Santiago LS, Dietze M (2021) Unraveling the relative role of light and water competition between lianas and trees in tropical forests: A vegetation model analysis. Journal of Ecology 109:519-540. 
    Muletz-Wolz, C. R., E. Wilson Rankin, S. McGrath-Blaser, M. Venkatraman, J. E. Maldonado, D. S. Gruner, and R. C. Fleischer. 2021. Identification of novel bacterial biomarkers to detect bird scavenging by invasive rats. Ecology and Evolution 11:1814-1828.
    Ossola A, GD Jenerette, A McGrath, W Chow, L Hughes, MR Leichman. 2021. Small vegetated patches greatly reduce urban surface temperature during a summer heatwave in Adelaide, Australia. Landscape and Urban Planning 209:104046
    Pulido-Chavez, M.F., E. Alvarado, T. DeLuca, R. Edmonds, and S.I. Glassman. 2021. High-severity wildfire reduces richness and alters composition of ectomycorrhizal fungi in low-severity adapted Ponderosa pine forests. Forest Ecology and Management 485, 118923. 
    Reynolds NK, Jusino MA, Stajich JE, Smith ME. Understudied, underrepresented, and unknown: Methodological biases that limit detection of early diverging fungi from environmental samples. Mol Ecol Resour. 2021 Oct 25. doi: 10.1111/1755-0998.13540. 
    Roman LA, TM Conway, TS Eisenman, AK Koeser, CO Barona, DH Locke, GD Jenerette, J Östberg, J Vogt. 2021. Beyond ‘trees are good’: Disservices, management costs, and tradeoffs in urban forestry. Ambio 50:615-630
    Swanson, H.A., J.-C. Svenning, A. Saxena, R. Muscarella, J. Franklin, M. Garbelotto, A.S. Matthews, O. Saito, A.E. Schnitzler, J. M. Serra-Diaz, A.L. Tsing, 2021, History as grounds for interdisciplinarity: Promoting sustainable woodlands through an integrative ecological and socio-cultural historical perspective, One Earth 4:226-237. https://doi.org/10.1016/j.oneear.2021.01.006       

    Tong S, X Ma, H Zhang, N Janechek, Y Wang, Y Wang, L Castro, GD Jenerette, J Wang. 2021. Impacts of soil NOx emission on O3 air quality in rural California. Environmental Science and Technology In Press
    Vasar, M., J. Davison, S.-K. Sepp, M. Öpik, M. Moora, K. Koorem, Y. Meng, J. Oja, A.A. Akhmetzhanova, S. Al-Quraishy, V.G. Onipchenko, J.J. Cantero, S.I. Glassman, W.N. Hozzein, and M. Zobel. 2021. Arbuscular Mycorrhizal Fungal Communities in the Soils of Desert Habitats. Microorganisms 9 (2), 229. 
    Ward RD, Stajich JE, Johansen JR, Huntemann M, Clum A, Foster B, Foster B, Roux S, Palaniappan K, Varghese N, Mukherjee S, Reddy TBK, Daum C, Copeland A, Chen IA, Ivanova NN, Kyrpides NC, Shapiro N, Eloe-Fadrosh EA, Pietrasiak N. Metagenome Sequencing to Explore Phylogenomics of Terrestrial Cyanobacteria. Microbiol Resour Announc. 2021 Jun 3;10(22):e0025821. doi: 10.1128/MRA.00258-21. 
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
  • 2020
    • Albanese D, Coleine C, Rota-Stabelli O, Onofri S, Tringe SG, Stajich JE, Selbmann L, Donati C. Pre-Cambrian roots of novel Antarctic cryptoendolithic bacterial lineages. Microbiome. 2021 Mar 19;9(1):63. doi: 10.1186/s40168-021-01021-0. 
      Andrews HM and GD Jenerette. 2020. Exotic grass litter modulates seasonal pulse dynamics of CO2 and N2O, but not NO, in Mediterranean-type coastal sage scrub at the wildland-urban interface. Plant and Soil 456:339–353
      Ávila-Lovera E, Garcillán PP, Silva-Bejarano C, Santiago LS (2020) Functional traits of leaves and photosynthetic stems of species from a sarcocaulescent scrub in the southern Baja California Peninsula. American Journal of Botany 107:1410-1422. 
      Barrows, C.W., A. Ramirez, L.C. Sweet, T.L. Morelli, C. Millar, N.Frakes, J. Rodgers, M. F. Mahalovich. 2020. Validating climate change refugia: empirical bottom-up approaches to support management actions. Frontiers in Ecology and the Environment 18: 298– 306, doi:10.1002/fee.2205
      Barrows, C.W., A. Ramirez, L.C. Sweet, T.L. Morelli, C. Millar, N.Frakes, J. Rodgers, M. F. Mahalovich. 2020. Validating climate change refugia: empirical bottom-up approaches to support management actions. Frontiers in Ecology and the Environment. In final review .
      Barrows, C.W., L.C. Sweet, J. Rangitsch, K. Lalumiere, T. Green, S. Heacox, M. Davis, M. Vamstad, J. Heintz, and J.E. Rodgers. 2020. Responding to increased aridity: evidence for range shifts in lizards across a 50-year time span in Joshua Tree National Park. Biological Conservation. https://doi.org/10.1016/j.biocon.2020.108667
      Brown, D. E. and J. M. Gee (2020). Elegant Quail (Callipepla douglasii), version 2.0. In Birds of the World (S. M. Billerman, B. K. Keeney, and P. G. Rodewald, Editors). Cornell Lab of Ornithology, Ithaca, NY, USA. https://doi.org/10.2173/bow.elequa.02
      Carey, C.J., S.I. Glassman, T.D. Bruns, E.L. Aronson, S.C. Hart. 2020. Soil microbial communities associated with giant sequoia: How does the world’s largest tree affect some of the world’s smallest organisms? Ecology and Evolution 10(3):6593-6609. 
      Coleine C, Albanese D, Onofri S, Tringe SG, Pennacchio C, Donati C, Stajich JE, Selbmann L. Metagenomes in the Borderline Ecosystems of the Antarctic Cryptoendolithic Communities. Microbiol Resour Announc. 2020 Mar 5;9(10):e01599-19. doi: 10.1128/MRA.01599-19. 
      Coleine C, Masonjones S, Sterflinger K, Onofri S, Selbmann L, Stajich JE. Peculiar genomic traits in the stress-adapted cryptoendolithic Antarctic fungus Friedmanniomyces endolithicus. Fungal Biol. 2020 May;124(5):458-467. doi: 10.1016/j.funbio.2020.01.005. 
      Coleine C, Pombubpa N, Zucconi L, Onofri S, Stajich JE, Selbmann L. Endolithic Fungal Species Markers for Harshest Conditions in the McMurdo Dry Valleys, Antarctica. Life (Basel). 2020 Feb 6;10(2):13. doi: 10.3390/life10020013. 
      Coleine C, Pombubpa N, Zucconi L, Onofri S, Turchetti B, Buzzini P, Stajich JE, Selbmann L. Uncovered Microbial Diversity in Antarctic Cryptoendolithic Communities Sampling three Representative Locations of the Victoria Land. Microorganisms. 2020 Jun 23;8(6):942. doi: 10.3390/microorganisms8060942. 
      Coleine C, Stajich JE, de Los Ríos A, Selbmann L. Beyond the extremes: Rocks as ultimate refuge for fungi in drylands. Mycologia. 2021 Jan-Feb;113(1):108-133. doi: 10.1080/00275514.2020.1816761. 
      Defrenne, C., J. Childs, C. Fernandez, M. Taggart, M. Allen, P. Hanson, and C. Iversen. in press. 2020. High-resolution minirhizotrons in an experimentally-warmed peatland provide an unprecedented glimpse at fine roots and their fungal partners. Plants, People, Planet. DOI: 10.1002/ppp3.10172.
      Di N., K. Zhang, K. R. Hladun, M. Rust, Y. Chen, Z. Zhu,T.-X. Liu, and J. T. Trumble. 2020. Joint effects of cadmium and copper on Apis mellifera forgers and larvae. Comparative Biochemistry and Physiology 237. 
      Eberwein JR, PM Homyak, CJ Carey, EL Aronson, GD Jenerette. 2020. Large nitrogen oxide emission pulses from desert soils and associated microbiomes. Biogeochemistry 149:239–250
      Fernandez-Bou, A. S., D. Dierick, M.F. Allen, and T.C. Harmon. 2020. Precipitation-drainage cycles lead to hot moments in soil carbon dioxide in a neotropical wet forest. Global Change Biology 26:5303-5319. DOI: 10.1111/gcb.15194.
      Griffiths, J. I., D. Z. Childs, R. D. Bassar, T. Coulson, D. N. Reznick and M. Rees.  Individual differences determine the strength of ecological interactions.  PNAS 117: 17068-17073.  
      Huang, C-Y, D. Niu, G. Kund, M. Jones, U. Albrecht, L. Nguyen, C. Bui, C. Ramadugu, K. Bowman, J. Trumble, and J. Hailing.  2020. Identification of citrus immune regulators involved in defense against Huanglongbing using a new functional screening system. Plant Biotechniology Journal: doi: 10.1111/pbi.13502. 
      Huang, Y., Morrison, G., Brelsford, A., Franklin, J., Jolles, D.D., Keeley, J., Parker, V.T., Saavedra, N., Sanders, A., Stoughton, T.R., Walhert, G., Litt, A., 2020, Subspecies differentiation in an enigmatic chaparral shrub species, American Journal of Botany 107(6):923-940 doi:10.1002/ajb2.1496.   
      Ibsen P, D Borowy, M Rochford, C Swan, GD Jenerette. 2020. Influence of climate and management on patterns of taxonomic and functional diversity of recreational park vegetation. Frontiers in Ecology and Evolution 8: DOI: 10.3389/fevo.2020.501502
      Liao C, J Qiu, B Chen, D Chen, B Fu, M Georgescu, C He, GD Jenerette, X Li, B Qiuying, P Shi, J Wu. 2020. Advancing landscape sustainability science: theoretical foundation and synergies with innovations in methodology, design, and application. Landscape Ecology 35:1-9
      Malar C M, Krüger M, Krüger C, Wang Y, Stajich JE, Keller J, Chen ECH, Yildirir G, Villeneuve-Laroche M, Roux C, Delaux PM, Corradi N. The genome of Geosiphon pyriformis reveals ancestral traits linked to the emergence of the arbuscular mycorrhizal symbiosis. Curr Biol. 2021 Apr 12;31(7):1570-1577.e4. doi: 10.1016/j.cub.2021.01.058. 
      Malhi, Y., J. Franklin, C. Field N. Knowlton, N. Seddon, M. Solan, M.G. Turner, 2020, Climate Change and Ecosystems -- Threats, Opportunities and Solutions, editorial introduction to the Themed Issue on the National Academy of Science USA - Royal Society UK Forum on Climate Change and Ecosystems, IN PRESS, Phil. Trans. Royal. Soc. B, 375(1794): https://doi.org/10.1098/rstb.2019.0104
      Morelli, T.L., C.W. Barrows, A. Ramirez, J. Cartwright, D.D. Ackerly, T. Eaves, J. Ebersole, M. Krawchuk, B. Letcher, M. Mahalovich, G.W. Meigs, J. Michalak, C. Millar, R.M. Quiñones, D. Stralberg, J.H. Thorne. 2020.Biodiversity Change in the Slow Lane: Advances in Refugia Thinking. Frontiers in Ecology and the Environment 2020; 18: 228– 234,doi:10.1002/fee.2189 
      Morelli, T.L., C.W. Barrows, A. Ramriez, and others. 2020.  Change Refugia: Biodiversity Change in the Slow Lane. Frontiers in Ecology and the Environment. Accepted.
      Phan, P., J. Purcell, and E. Wilson Rankin Erin. 2020. Formica francoeuri responds to pheromones and defensive chemical cues of social bees. Insectes Sociaux 67:547-556.
      Pombubpa N, Pietrasiak N, De Ley P, Stajich JE. Insights into dryland biocrust microbiome: geography, soil depth and crust type affect biocrust microbial communities and networks in Mojave Desert, USA. FEMS Microbiol Ecol. 2020 Sep 1;96(9):fiaa125. doi: 10.1093/femsec/fiaa125. PMID: 32573682; PMCID: PMC7426032.
      Pouzoulet J, Pivovaroff AL, Scudiero E, De Guzman ME, Rolshausen PE, Santiago LS (2020) Contrasting adaptation of xylem to dehydration in two Vitis vinifera L. sub-species. Vitis 59:53-61
      Recurrent mutualism breakdown events in a legume rhizobia metapopulation.   K.A. Gano-Cohen, C.E. Wendlandt, K. Al Moussawi, P.J. Stokes, K.W. Quides, A.J. Weisberg, J.H. Chang, J.L. Sachs. 2020  Proceedings of the Royal Society of London. IN PRESS 
      Reznick, D. N., S. De Bona, A. Lopez-Sepulcre, M. Torres, R. D. Bassar, P. Benzen and J. Travis.  Experimental study of species invasion: early population dynamics and the role of disturbance in invasion success.  Ecological Monographs 90: Article e)1413
      Rogowski, E. L. B., A. D. Van Alst, J. Travis, D. N. Reznick, T. Coulson and R. D. Bassar.  Novel parasite invasion leads to rapid demographic compensation and recovery in an experimental population of guppies.  PNAS: doi/10.1073/pnas.2006227117.
      Roth, AM, JM Gee, CN Keiser. Potential role of autumn copulatory behavior in pair formation in California Quail (Callipepla californica). In press Western Birds.
      Santiago LS (2020) Going underground: new approaches to assess dynamic root behaviour during drought. New Phytologist 225:599–600
      Silva JLA, Souza AF, Santiago LS, Gripp AdR, Asato AEB, Silva GHS, Guimarães de Alencar MI, Caliman A (2020) Small biodiversity effects on leaf litter production of a seasonal heath vegetation. Journal of Vegetation Science 31:877-886. 
      T. D Bruns, J. A. Chung, A.A. Carver, and S.I. Glassman. 2020. A simple pyrocosm for studying soil microbial response to fire reveals a rapid, massive response by Pyronema species. PLoS ONE 15(3): e0222691. 
      Valliere, J.M., G.M. Bucciarelli, A. Bytnerowicz, M.E. Fenn, I.C. Irvine, R.F. Johnson and E.B. Allen. 2020. Declines in native forb richness of an imperiled plant community across an anthropogenic nitrogen deposition gradient. Ecosphere 11(2):e03032. 10.1002/ecs2.3032.
      Vandepol N, Liber J, Desirò A, Na H, Kennedy M, Barry K, Grigoriev IV, Miller AN, O'Donnell K, Stajich JE, Bonito G. Resolving the Mortierellaceae phylogeny through synthesis of multi-gene phylogenetics and phylogenomics. Fungal Divers. 2020 Sep;104(1):267-289. doi: 10.1007/s13225-020-00455-5
      Vandepol N, Liber J, Desirò A, Na H, Kennedy M, Barry K, Grigoriev IV, Miller AN, O'Donnell K, Stajich JE, Bonito G. Resolving the Mortierellaceae phylogeny through synthesis of multi-gene phylogenetics and phylogenomics. Fungal Divers. 2020 Sep;104(1):267-289. doi: 10.1007/s13225-020-00455-5. 
      Wilson Rankin, E. E., S. K. Barney, and G. E. Lozano. 2020. Reduced water negatively impacts social bee survival and productivity via shifts in floral nutrition. Journal of Insect Science 20:e15.
      Wood, D.A., A. Worrel-Black, R. Black, A. Mitelberg, M. Fisher, R.N. Fisher, A.G. Vandergast, and C.W. Barrows. 2020. Newly Documented Population Extends Geographic Range and Genetic Diversity for the Peninsula Leaf-toed Gecko (Phyllodactylus nocticolus) into the Transverse Ranges of Southern California. Herpetological Review 51: 456–458.
      Woodard, S. Hollis, Sarah Federman, Rosalind R. James, Bryan N. Danforth, Terry L. Griswold, David Inouye, Quinn S. McFrederick et al. "Towards a US national program for monitoring native bees." Biological Conservation 252 (2020): 108821.
      Zonana, DM, JM Gee, MD Breed, DF Doak. 2020. Dynamic shifts in social network structure and composition within a breeding hybrid population.  Journal of Animal Ecology.
      Zurell D, Franklin J, König C, Bouchet PJ, Serra-Diaz JM, Dormann CF, Elith J, Fandos Guzman G, Feng X, Guillera-Arroita G, Guisan A, Leitão PJ, Lahoz-Monfort JJ, Park DS, Peterson AT, Rapacciuolo G, Schmatz DR, Schröder B, Thuiller W, Yates KL, Zimmermann NE, Merow C, 2020, A standard protocol for describing species distribution models Ecography. 43:1261-1277 DOI: 10.1111/ecog.04960. 
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
       
  • 2019
     Avolio M, DE Pataki, GD Jenerette, S Pincetl, L Weller-Clarke, J Cavender-Bares, TW Gillespie, SE Hobbie, KL Larson, HR McCarthy, T Trammell 2019. Urban plant diversity in Los Angeles, California: Species and functional type turnover in cultivated landscapes. Plants, People, Planet DOI: 10.1002/ppp3.10067
     Park IW and GD Jenerette. 2019. Causes and feedbacks of widespread grass invasion into chaparral shrublands. Landscape Ecology 34:459–471
     Yan J, Zhou W, and GD Jenerette. 2019. Testing an energy exchange and microclimate cooling hypothesis for the effect of vegetation configuration on urban heat. Agricultural and Forest Meteorology 107666
    A Rubanov, KA Russell, JA Rothman, JC Nieh, QS McFrederick.2019 Intensity of Nosema ceranae infection is associated with specific honey bee gut bacteria and weakly associated with gut microbiome structure.  Scientific Reports 9 (1) 38920. 
    A Voulgari-Kokota, QS McFrederick, I Steffan-Dewenter, A Keller, 2019 Drivers, diversity, and functions of the solitary-bee microbiota.  Trends in Microbiology, 10.1016/j.tim.2019.07.011
    Acosta-Rangel A, Li R, Celis N, Suarez D, Santiago LS, Arpaia ML, Mauk PA (2019) The physiological response of ‘Hass’ avocado to salinity as influenced by rootstock. Scientia Horticulturae 256:108629
    Allen, E.B., C. McDonald and B. E. Hilbig. 2019. Long-term Prospects for Restoration of Coastal Sage Scrub: Invasive Species, Nitrogen Deposition, and Novel Ecosystems. In M. Narog, technical coordinator. Pages 1-18 in Proceedings of the Chaparral Restoration Workshop, Arcadia, CA, June 17-20, 2013. U.S.D.A., Forest Service Pacific Southwest Research Station Albany, California General Technical Report PSW-GTR-265. https://www.fs.usda.gov/treesearch/pubs/58509
    Allen, M.F. 2019. Carbon credits and the Western Riverside County Multiple Species Habitat Plan. Report to the Western Riverside County Regional Conservation Authority. 10 pgs.
    Allen, M.F., D. E. Tuthill, J. States, S. E. Williams and T. W. Henkel. 2019. In memoriam: Martha Christensen, 1932−2017. Mycologia, DOI: 10.1080/00275514.2018.1544815.
    Andrade, R., Larsen, K.L., Hondula, D., Franklin, J., 2019, Social-spatial analyses of attitudes towards the desert in a Southwestern U.S. city, Annals of the American Association of Geographers 109(6):1845-1865. https://doi.org/10.1080/24694452.2019.1580498   
    Aronson, E.L., D. Dierick, J. K. Botthoff, S. Oberbauer, T. J. Zelikova, T. Harmon, P. Rundel, R.F. Johnson, A.C. Swanson, M.F. Allen. 2019. ENSO-Influenced Soil Moisture and Drought Drive Methane Flux Dynamics in a Costa Rican Rainforest Soil. Journal of Geophysical Research - Biogeosciences, 124: 2267-2276. https://doi.org/10.1029/2018JG004832.
    Ávila-Lovera E, Haro R, Ezcurra E, Santiago LS (2019) Costs and benefits of photosynthetic stems in desert species from southern California. Functional Plant Biology 46:175-186
    Avolio M, DE Pataki, GD Jenerette, S Pincetl, L Weller-Clarke, J Cavender-Bares, TW Gillespie, SE Hobbie, KL Larson, HR McCarthy, T Trammell 2019. Urban plant diversity in Los Angeles, California: Species and functional type turnover in cultivated landscapes. Plants, People, Planet DOI: 10.1002/ppp3.10067
    Avolio M, DE Pataki, GD Jenerette, S Pincetl, L Weller-Clarke, J Cavender-Bares, TW Gillespie, SE Hobbie, KL Larson, HR McCarthy, T Trammell 2019. Urban plant diversity in Los Angeles, California: Species and functional type turnover in cultivated landscapes. Plants, People, Planet DOI: 10.1002/ppp3.10067
    Bachie O, Santiago LS, McGiffen, ME (2019) Physiological Responses of Onion Varieties to varying Photoperiod and Temperature Regimes. Agriculture 9:214
    Barrows, C.W. 2019. The Coachella Valley Solution: Balancing Economic Development and the Protection of a Threatened Lizard, In Perkins, O.P. (Ed.) Advances in Animal Science and Zoology. Nova Science Publishers, Hauppauge, New York, USA. ISBN: 978-1-53616-489-3
    Barrows, C.W.  2019. Responses of a montane lizard assemblage to an extended drought. Southwestern Naturalist 63: 173-181.
    Bodden, J., J. A. Hazlehurst, and E. Wilson Rankin Erin. 2019. Floral traits predict frequency of defecation on flowers by foraging bumble bees. Journal of Insect Science 19:e2.
    Bruns, T.D., J.A. Chung, A.A. Carver, and S.I. Glassman. 2019. A simple pyrocosm for studying soil microbial response to fire reveals a rapid, massive 2 response by Pyronema species. https://www.biorxiv.org/content/biorxiv/early/2019/09/09/763169.full.pdf
    Burden, C. M., M. O. Morgan, K. R. Hladun, G. V. Amdam, J. T. Trumble, and B. H. Smith. 2019. Acute sublethal exposure to toxic heavy metals alters honey bee (Apis mellifera) feeding behavior. Scientific Reports. 9:4253 | https://doi.org/10.1038/s41598-019-40396-x 
    Carey, C.J, Glassman, S.I., Bruns, T.D., Aronson, E.A. and S. C. Hart. 2019. Soil microbial communities associated with giant sequoia: How does the world’s largest tree affect some of the world’s smallest organisms? https://www.biorxiv.org/content/10.1101/807040v1
    Chen J, Y Kuzyakov, GD Jenerette, G Xiao, W Liu, Z Wang, W Shen. 2019. Intensified precipitation seasonality reduces soil inorganic N content in a subtropical forest: Greater contribution of leaching loss than N2O emissions. Journal of Geophysical Research Biogeosciences 124:494–508
    Clark, C.M., S.M. Simkin, E.B. Allen, W.D. Bowman, J. Belnap, M.L. Brooks, S.L. Collins, L.H. Geiser, F.S. Gilliam, S. E. Jovan, L.H. Pardo, B.K. Schulz, C.J. Stevens, K.N. Suding, H.L. Throop, and D.M. Waller. 2019. Potential vulnerability of 348 herbaceous species to atmospheric deposition of nitrogen and sulfur in the U.S. Nature Plants 5:697-705.
    Coleine C, Stajich JE, Pombubpa N, Zucconi L, Onofri S, Canini F, Selbmann L. Altitude and fungal diversity influence the structure of Antarctic cryptoendolithic Bacteria communities. Environ Microbiol Rep. 2019 Oct;11(5):718-726. doi: 10.1111/1758-2229.12788. 
    Cowling, R.M., Potts, A.*, Franklin, J., Midgley, G.F., and Marean, C.W., IN PRESS, Describing a drowned ecosystem: Last Glacial Maximum vegetation reconstruction of the PalaeoAgulhas Plain, Quaternary Science Reviews Special Issue https://doi.org/10.1016/j.quascirev.2019.105866
    Davis, F.W., Synes, N.W.*, Fricker, G.A.*, McCullough, I.M., Serra-Diaz, J.M.*, Franklin, J., Flint, A.L., 2019, LiDAR-derived topography and forest structure predict fine-scale variation in daily surface temperatures in oak savanna and conifer forest landscapes, Agricultural and Forest Meteorology 269-270: 192-202. https://doi.org/10.1016/j.agrformet.2019.02.015  
    De Bona, S., M. Bruneaux,  A. E. G. Lee, D. Reznick, P. Bentzen, A. Lopez-Sepulcre.  Spatio-temporal dynamics of density-dependent dispersal during a population colonization.  Ecology Letters.  DOI: 10.1111/ele.13205.
    De La Pena, C., Garduño-Niño, E., Vaca-Paniagua, F., Díaz-Velásquez, C., Barrows, C.W., Gómez-Gil Sala, B., and Valenzuela-Núñez, L.M. 2019. Comparison of the fecal bacterial microbiota composition between wild and captive Bolson tortoises (Gopherus flavomarginatus). Herpetological Conservation and Biology 14:587-600.
    DM Zonana, JM Gee, ES Bridge, MD Breed, DF Doak. 2019. Assessing Behavioral Associations in a Hybrid Zone through Social Network Analysis: Complex Assortative Behaviors Structure Associations in a Hybrid Quail Population. The American Naturalist 193 (6), 852-865
    Dudley, S., C. Sun, M. McGinnis, J. Trumble, and J. Gan. 2019. Formation of biologically active benzodiazepine metabolites in Arabidopsis thaliana cell cultures and vegetable plants under hydroponic conditions. Science of the Total Environment 662: 622-630.
    EC Palmer-Young, L Ngor, R Burciaga, JA Rothman, TR Raffel, QS McFrederick. 2019 Temperature dependence of parasitic infection and gut bacterial communities in bumble bees. Environmental Microbiology. In-press.
    Ellstrand NC. 2019. The evolution of crops that do not need us anymore. New Phytologist 224:550-551.
    Engelbrecht F. A., C. W. Marean, R. M. Cowling, C. Engelbrecht, F. H. Neumann, L. Scott, R. Nkoana, D. O’Neal, E. Fisher, E. Shook, J. Franklin, M. Thatcher, J. McGregor, J. Van der Merwe, Z. Dedekind and M. Difford, IN PRESS, Downscaling Last Glacial Maximum climate over southern Africa, Quaternary Science Reviews https://doi.org/10.1016/j.quascirev.2019.105879
    Fernandez-Bou, A.S., D. Dierick, A.C. Swanson, M.F. Allen, A.G.F. Alvarado, A. Artavia-León, O. Carrasquillo-Quintana, D.A. Lachman, S. Oberbauer, A. Pinto-Tomás, Y. Rodríguez-Reyes, P. Rundel, L. Schwendenmann, T.J. Zelikova, and T.C. Harmon. 2019. The Role of the Ecosystem Engineer, the Leaf-Cutter Ant Atta cephalotes, on Soil CO2 Dynamics in a Wet Tropical Rainforest. Journal of Geophysical Research. Biogeosciences. 124: 260-273. DOI: 10.1029/2018JG004723
    Fertitta-Roberts C, PY Oikawa, and GD Jenerette. 2019. Evaluating the greenhouse gas mitigation-potential of alternate wetting and drying in rice through life cycle assessment. Science of the Total Environment 653:1343–1353
    Fisher, K., West, M., Lomeli, A. M., Woodard, S. H., & Purcell, J. (2019). Are societies resilient? Challenges faced by social insects in a changing world. Insectes Sociaux, 66(1), 5-13.
    Franklin, J., Steadman, D.W., Majure, L.C., Oswald, J.A.*, Soltis, D.E., Encarnación, Y., Clase, T., Almonte-Espinosa, H., Kratter, A.W., Terrill, R.S., 2019, The changing ecological communities along an elevation gradient in seasonally dry tropical forest on Hispaniola (Sierra Martín García, Dominican Republic), Biotropica 51:802-816 DOI: 10.1111/btp.12707
    Fricker, G.A.*, Synes, N.W.*, Serra-Diaz, J. M.*, North, M.P., Davis, F. W., Franklin, J., 2019, More than climate: Predictors of tree canopy height vary with scale in complex terrain, Sierra Nevada, CA (USA), Forest Ecology & Management 434:142-153. https://doi.org/10.1016/j.foreco.2018.12.006
    Fricker, G.A.*, Ventura, J.D., North, M., Wolf, J., Davis, F. W., Franklin, J., 2019, A convolutional neural network classifier identifies tree species in mixed conifer forest from hyperspectral imagery, Remote Sensing, 11(19), 2326 https://doi.org/10.3390/rs11192326
    Frie, A, A Garrison, M Schaefer, S Bates, J Botthoff, M Maltz, S Ying, T Lyons, MF Allen, EL Aronson, R Bahreini. 2019. "Dust Sources in the Salton Sea Basin: A Clear Case of an Anthropogenically Impacted Dust Budget." Environmental Science & Technology. 53(16):9378-9388. doi: 10.1021/acs.est.9b02137.
    Furnas, Brett; S. Newton, G. Capehart, and C.W. Barrows. 2019. Hierarchical distance sampling to estimate population sizes of common lizards across a desert ecoregion. Ecology and Evolution. DOI: 10.1002/ece3.4780
    Heintz, J.G., Sweet, Lynn C., Barrows, C.W.  2019. Impacts of native and invasive species on the reproduction of triplerib milkvetch (Astragalus tricarinatus) [Fabaceae]. In Press Madrono
    Hernandez, R., A. Armstrong, J. Burney, G. Ryan, K. Moore-O'Leary, I. Diédhiou, R. Davis, S. Grodsky, L. Saul-Gershenz, J. Macknick, D. Mulvaney, G. Heath, S. Easter, M. Hoffacker, M.F., Allen, and D. Kammen, 2019. Techno-ecological synergies of solar energy for global sustainability. Nature Sustainability 2: 560-568. https://doi.org/10.1038/s41893-019-0309-z
    Hilbig, B.E. and E.B. Allen.  2019. Soil biota in abandoned citrus agricultural fields: potential limits to restoration of native forbs in southern California. Invasive Plant Science and Management doi: 10.1017/inp.2019.19.
    Host investment into symbiosis varies among genotypes of the legume Acmispon strigosus but sanctions are uniform.  Wendlandt, C.E., Regus, J.U., Hollowell, A.C., Quides, K.W., Lyu, J.Y., Adinata, E., Sachs, J.L., 2019  New Phytologist. 221: 446-458
    HQ Vuong, QS McFrederick,2019 Comparative genomics of wild bee and flower isolated Lactobacillus reveals potential adaptation to the bee host.  Genome Biology and Evolution, https://doi.org/10.1093/gbe/evz136
    Inman, R., Fotheringham, S., Franklin, J., Esque T., Edwards T., Nussear. K., 2019, Local niche differences predict genotype associations in sister taxa of desert tortoise, Diversity and Distributions 25(8): 1194-1209. DOI: 10.1111/ddi.12927.
    Interspecific conflict and the evolution of ineffective rhizobia. Gano-Cohen, K.A., Wendlandt, C.E., Stokes, P.J., Blanton, M.A., Quides, K.W., Zomorrodian, A., Adinata, E., Sachs, J.L. 2019  Ecology Letters. 22: 914-924.
    J. Golan, C.A. Adams, H. Cross, H. Elmore, M. Gardes, S.I. Glassman, S. C. Gonçalves, J Hess, F Richard, Y-W Wang, B. Wolfe and A Pringle. 2019. Native and invasive populations of the ectomycorrhizal death cap Amanita phalloides are highly sexual but dispersal limited. https://www.biorxiv.org/content/10.1101/799254v1
    JA Rothman, C Andrikopoulos, D Cox-Foster, QS McFrederick. 2019 Floral and foliar source affect the bee nest microbial community.  Microbial Ecology https://doi.org/10.1007/s00248-018-1300-3
    JA Rothman, L Leger, P Graystock, KA Russell, QS McFrederick. The bumble bee microbiome increases survival of bees exposed to selenate toxicity. 2019 Environmental Microbiology https://doi.org/10.1111/1462-2920.14641
    JA Rothman, L Leger, J Kirkwood, QS McFrederick. 2019 Cadmium and selenate exposure affects the honey bee microbiome and metabolome, and bee-associated bacteria show potential for bioaccumulation. Applied and Environmental Microbiology. doi:10.1128/AEM.01411-19
    Kraaij, T., Engelbrecht, F., Franklin, J., Cowling, R.M., IN PRESS, A fiery past: a comparison of glacial and contemporary fire regimes on the Palaeo-Agulhas Plain, Cape Floristic Region, Quaternary Science Reviews Special Issue https://doi.org/10.1016/j.quascirev.2019.106059
    L. C. Sweet, C. Barrows, S. Heacox, M. Davis, R. Johnson (2019) Coachella Valley Multiple Species Habitat Conservation Plan & Natural Community Conservation Plan: Valley Floor Reserve Units 2013 & 2018 Vegetation Map Report. Final Report. Prepared for: Coachella Valley Conservation Commission.
    Li, Z., G. Kund, D. M. De Jong, X. Feng1, M. A. Mutschler, J. T. Trumble. 2019. Effects of high-level acylsugar producing tomato lines on the development of tomato psyllids (Bactericera cockerelli). J. Econ. Entomol. 112: 1926–1931. 
    Lisovski, S, Z Németh, JC Wingfield, JS Krause, KA Hobsoon, NE Seavy, J Gee, M Ramenofsky. 2019. Migration pattern of Gambel’s White-crowned Sparrow along the Pacific Flyway. Journal of Ornithology 160 (4), 1097-1107.
    Loope, K. J., J. W. Baty, P. J. Lester, and E. E. Wilson Rankin. 2019. Pathogen shifts in a honeybee predator following the arrival of the Varroa mite. Proceedings of the Royal Society B: Biological Sciences 286:20182499.
    Lyu M., X. Li, J. Xie, P.M. Homyak, L. Ukonmaanaho, Z. Yang, X. Liu, C. Ruan, Y. Yang. 2019. Root–microbial interaction accelerates soil nitrogen depletion but not soil carbon after increasing litter inputs to a coniferous forest. Plant and Soil
    Macias AM, Marek PE, Morrissey EM, Brewer MS, Short DPG, Stauder CM, Wickert KL, Berger MC, Metheny AM, Stajich JE, Boyce G, Rio RVM, Panaccione DG, Wong V, Jones TH, Kasson MT. Diversity and function of fungi associated with the fungivorous millipede, Brachycybe lecontii. Fungal Ecol. 2019 Oct;41:187-197. doi: 10.1016/j.funeco.2019.06.006.
    Massoud EC, Purdy AJ, Christoffersen BO, Santiago LS, Xu C (2019) Bayesian inference of hydraulic properties in and around a white fir using a process-based ecohydrologic model. Environmental Modelling & Software 115:76-85
    Mauck, K.E., Sun, P., Meduri, V., Hansen, A.K., 2019. New Ca. Liberibacter psyllaurous haplotype resurrected from a 49-year-old specimen of Solanum umbelliferum: a native host of the psyllid vector. Sci. Rep. 9, 9530. https://doi.org/10.1038/s41598-019-45975-6
    McFrederick, Q. S. and Rehan, S. 2019 Wild bee foraging patterns and microbial communities co-vary across landscapes.  Microbial Ecology 77 (2), 513-522, https://doi.org/10.1007/s00248-018-1232-y.
    Norberg, A.M.I., Abrego, N., Blanchet, F. G., Adler, F., Anderson, B.J., Antilla, J., Araújo, M.B., Clark, J., Dallas, T., Dunson, D., Elith, J., Foster, S., Fox, R., Franklin, J., Godsoe, W., Guisan, A., O’Hara, B., Hill, N.A., Holt, R.D., Hui, F.K.C., Husby, M., Kålås, J., Lehikoinen, A., Luoto, M., Mod, H., Newell, G., Renner, I., Roslin, T., Soininen, J., Thuiller, W., Vanahtalo, J., Warton, D., White, M., Zimmermann, N.E., Gravel, D. and Ovaskainen, O., 2019, A comprehensive evaluation of predictive performance of 27 species distribution models at species and community levels, Ecological Monographs 89(3): e01370(1-24) https://doi.org/10.1002/ecm.1370.
    Oswald, J.A.*, Steadman, D.W., Franklin, J., 2019, Unexpected limb proportions in a Pleistocene population of Eastern Meadowlark (Sturnella magna) from the Bahamas, 2019, Caribbean Naturalist 68:1-22 https://www.eaglehill.us/CANAonline/CANA-access-pages/CANA-regular/CANA-068-Oswald.shtml
    Park IW and GD Jenerette. 2019. Causes and feedbacks of widespread grass invasion into chaparral shrublands. Landscape Ecology 34:459–471
    Phillips, M.L. S.E. Weber, L.V. Andrews, E.L. Aronson, M.F. Allen and E.B. Allen. 2019. Fungal community assembly in soils and roots under plant invasion and nitrogen deposition. Fungal Ecology 40: 107-117. https://doi.org/10.1016/j.funeco.2019.01.002
    Phillips, M.L., B. McNellis, M.F. Allen, and E.B. Allen. 2019. Differences in root phenology and water depletion by an invasive grass explains persistence in a Mediterranean ecosystem. American Journal of Botany 106: 1210–1218. doi:10.1002/ajb2.1344.
    Phillips, M.L., B.E. McNellis, M.F. Allen, and E.B. Allen. 2019. Differences in root phenology and water depletion by an invasive grass explains persistence in a Mediterranean ecosystem. American Journal of Botany 106: 1–9.
    Phillips, M.L., E.L. Aronson, M.R. Maltz, E.B. Allen. 2019.. Native and invasive inoculation sources modify fungal community assembly and biomass production of a chaparral shrub. Applied Soil Ecology, doi: 10.1016/j.apsoil.2019.103370.
    Phillips, M.L., S.E. Weber, L.V. Andrews, E.L. Aronson, M.F. Allen, and E.B. Allen. 2019. Fungal community assembly in soils and roots under plant invasion and nitrogen deposition. Fungal Ecology 40:107-117.
    Porter, W.C., Heald, C.L., 2019. The mechanisms and meteorological drivers of the summertime ozone–temperature relationship. Atmos. Chem. Phys. 19, 13367–13381. https://doi.org/10.5194/acp-19-13367-2019
    Pouzoulet J, Scudiero E, Schiavon M, Santiago LS, Rolshausen PE (2019) Modeling of xylem vessel occlusion in grapevine. Tree Physiology 39:1438-1445 (cover photo)
    Reznick, D. N. and J. Travis.  Experimental studies of evolution and eco-evo dynamics in guppies (Poecilia reticulata).  Annual Reviews of Ecology, Evolution and Systematics 50:  335-354.
    Reznick, D. N., C. A. Handelsman, R. D. Bassar, C. K. Ghalambor, J. Arendt, T. Coulson, T. Potter, E. W. Ruell, J. Torres-Dowdall, P. Bentzen and J. Travis.  Eco-evolutionary feedbacks predict the time course of rapid life history evolution.  American Naturalist 194: 671-692.    DOI: 10.1086/705380
    Reznick, D. N., J. Losos and J. Travis.  From low to high gear: there has been a paradigm shift in our understanding of evolution.  Ecology Letters 22: 233-244.
    Rowan, J., Beaudrot, L., Franklin, J., Reed. K. E., Smail, I. E., Zamora, A., Kamilar, J. M., 2019, Divergent evolutionary and ecological legacies shape large mammal biodiversity in the global tropics and sub-tropics, Proceedings of the National Academy of Sciences
    Sickman J.O., A.E. James, M.E. Fenn, A. Bytnerowicz, D.M. Lucero, and P.M. Homyak.  2019. A test of the integrated total nitrogen input (ITNI) method for quantifying N deposition in a semi-arid region. Science of the Total Environment 646: 1253-1264
    Silva JLA, Souza AF, Santiago LS (2019) Traits uncover quasi-neutral community assembly in a coastal heath vegetation. Journal of Plant Ecology 12:703–712
    Simon, Troy N., A. J. Binderup, A. S. Flecker, J. F. Gilliam, M. C. Marchall, S. A. Thomas, J. Travis, D. N. Reznick and C. M. Pringle.  Landscape patterns in top-down control of decomposition: omnivory disrupts a tropical detrital-based trophic cascade.  Ecology 100: e02723.  DOI/10.1002/ecy.2723.
    Sun, C., S. Dudley, M. McGinnis, J. Trumble, J. Gan. 2019. Acetaminophen detoxification in cucumber plants via induction of glutathione S-transferases. Science of the Total Environment 649: 431–439. 
    Swanson, A., L. Schwendenmann, M.F. Allen, E. Aronson, A. Artavia-León, D. Dietick, A. Fernandez-Bou, T. Harmon, C. Murillo-Cruz, S. Oberbauer, A. Pinto-Tomás, P. Rundel, and T. Zelikova. 2019. Welcome to the Atta world: A framework for understanding the effects of leaf-cutter ants on ecosystem functions. Functional Ecology. 33: 1386-1399. DOI: 10.1111/1365-2435.13319 
    Sweet, L. C., T. Green, J. Heintz, N. Frakes, N. Graver, J. Rangitsch, J. Rodgers, S. Heacox, C. W. Barrows. (2019) “Congruence between Future Distribution Models and Empirical Data for an Iconic Species at Joshua Tree National Park.” Ecosphere. 10(6): Article e02763
    Sweet, L.C., C. Barrows, J. Heintz, R. Merizan, S. Heacox, M. Davis and R. Johnson. (2019) Coachella Valley Multiple Species Habitat Conservation Plan & Natural Community Conservation Plan: Dos Palmas Conservation Area 2013 & 2018 Vegetation Map Report. Final Report. Prepared for: Coachella Valley Conservation Commission.
    Synes, N.*, Brown, C., Palmer, S.C.F., Bocedi, G., Osborne, P.E., Watts, K., Franklin, J., Travis, J.M.J., 2019, Coupled land use and ecological models reveal emergence and feedbacks in socio-ecological systems, Ecography 42:814-825 published on-line 12/13/18; doi: 10.1111/ecog.04039.
    Vitória AP, Alves LF, Santiago LS (2019) Atlantic forest and leaf traits: an overview. Trees 33:1535-1547
    Weber, S.E., J.M. Diez, L.V. Andrews, M.L. Goulden, E.L. Aronson, and M.F. Allen. 2019. Responses of arbuscular mycorrhizal fungi to multiple coinciding global change drivers. Fungal Ecology 40: 62-71. DOI: 10.1016/j.funeco.2018.11.008
    Welles SR, Ellstrand NC. 2019. Evolution of increased vigor associated with allopolyploidization in the newly formed invasive species Salsola ryanii. AoB Plants plz039, https://doi.org/10.1093/aobpla/plz039
    Woodard, S. H., Duennes, M. A., Watrous, K. M., & Jha, S. (2019). Diet and nutritional status during early adult life have immediate and persistent effects on queen bumble bees. Conservation physiology, 7(1), coz048.
    Wren, C., Botha, S., Harris, J.A., Venter, J., Franklin, J., Wood, B.W., Hill, K., Shook, E., Marean, C. W., Fisher, E.C., Cowling, R.M., Janssen, M.A., de Vynk, J., IN PRESS, The foraging potential of the Holocene Cape South Coast of South Africa without the Palaeo-Agulhas Plain, Quaternary Science Reviews Special Issue https://doi.org/10.1016/j.quascirev.2019.06.012
    Yan J, Zhou W, and GD Jenerette. 2019. Testing an energy exchange and microclimate cooling hypothesis for the effect of vegetation configuration on urban heat. Agricultural and Forest Meteorology 107666
    Ziegler C, Coste S, Stahl C, Delzon S, Levionnois S, Cazal J, Cochard H, Esquivel-Muelbert A, Goret J, Heuret P, Jaouen G, Santiago LS, Bonal D (2019) Large hydraulic safety margins protect Neotropical canopy rainforest tree species against hydraulic failure during drought. Annals of Forest Science 76:115
    Zonana, DM, JM Gee, ES Bridge, MD Breed, DF Doak. 2019. Assessing behavioral associations in a hybrid zone through social network analysis: Complex assortative behaviors structure associations along the edge of a quail hybrid zone. The American Naturalist 193:6, 852-865. 
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
  • 2018
    Aburto-Oropeza, O. et al. 2018. Harnessing cross-border resources to confront climate change. Environmental Science and Policy 87: 128-132. DOI: 10.1016/j.envsci.2018.01.001.
    Aburto-Oropeza, O., A. F. Johnson, M. Agha, E. B. Allen, M. F. Allen, and 85 other authors. 2018. Harnessing Cross-border Resources to Confront Climate Change. Environmental Science & Policy 87:128-132.
    Acosta-Rangel A, Avila-Lovera E, De Guzman ME, Torres L, Haro R, Arpaia ML, Focht E, Santiago LS (2018) Evaluation of leaf carbon isotopes and functional traits in avocado reveals water-use efficient cultivars. Agriculture Ecosystems & Environment 263:60-66
    Allen, E.B., K. Williams, J. L. Beyers, M. Phillips, S. Ma and C. M. D’Antonio. 2018. Chaparral Restoration. Chapter 13. Pages 347-384 in Underwood, E.C., H. D. Safford, J. E. Keeley, N. Molinari and J. J. Hooper, eds. Valuing Chaparral: Ecological, Socio-Economic, and Management Perspectives. Springer International Publishing.
    Allen, M.F. Matthew R. O'Neill, Charles M. Crisafulli, and James A. MacMahon. 2018. Succession and mycorrhizae on Mount St. Helens. pp 199-216. In: V.H. Dale and C.M. Crisafulli. Ecological Responses at Mount St. Helens: Revisited 35 years after the 1980 eruption. Springer.
    Andrade, R., Bateman, H.L., Franklin, J., and Allen, D., 2018, Waterbird community composition, abundance, and diversity along an urban gradient, Landscape and Urban Planning 170:103-111. https://doi.org/10.1016/j.landurbplan.2017.11.003
    Barrows, C.W. 2018. Biodiversity and Ecosystems, In F. Hopkins (lead author) Inland Deserts Summary Report. California’s Fourth Climate Change Assessment. Publication number: SUM-CCCA4-2018-008.
    Chater JM, Santiago LS, Merhaut DJ, Jia ZY, Mauk PA, Preece JE (2018) Orchard establishment, precocity, and eco-physiological traits of several pomegranate cultivars. Scientia Horticulturae 235:221-227
    Chater JM, Santiago LS, Merhaut DJ, Preece JE, Jia ZY (2018) Diurnal patterns of photosynthesis and water relations for four orchard-grown pomegranate (Prunica granatum L.) cultivars. Journal of the American Pomological Society 72:157-165
    Cornwell WK, Wright IJ, Turner J, Maire V, Barbour MM, Cernusak LA, Dawson T, Ellsworth D, Farquhar GD, Griffiths H, Keitel C, Knohl A, Reich PB, Williams DG, Bhaskar R, Cornelissen JHC, Richards A, Schmidt S, Valladares F, Körner C, Schulze E-D, Buchmann N, Santiago LS (2018) Climate and soils together regulate photosynthetic carbon isotope discrimination within C3 plants worldwide. Global Ecology and Biogeography 27:1056-1067
    Dr. Michael Allen: California desert monuments long overdue, (please open link in Internet Explorer or Chrome, does not work in Firefox), http://www.pe.com/articles/desert-795101-national-monument.html 
    Dr.'s Thomas Harmon and Michael Allen: Leafcutter ant colonies may be an overlooked source of carbon dioxide emissions, new study finds, https://blogs.agu.org/geospace/2018/12/17/leafcutter-ant-colonies-may-be-an-overlooked-source-of-carbon-dioxide-emissions-new-study-finds/ 
    Ellstrand NC. 2018. “Born to run?” Not necessarily: Species and trait bias in persistent free-living transgenic plant populations. Frontiers in Biotechnology and Bioengineering 6:88. doi: 10.3389/fbioe.2018.00088
    Franklin, J., Andrade, R., Daniels, M.L., Fairbairn, P.W., Fandino, M.C., Gillespie, T.W., Gonzalez, G., Gonzalez, O., Imbert, D., Kapos, V., Kelly, D.L., Marcano-Vega, H., Meléndez-Ackerman, E., McLaren, K.P., McDonald, M.A., *Ripplinger, J., Rojas-Sandoval, J., Ross, M.S., Ruiz, J., Steadman, D.W., Tanner, E.V.J., Terrill, I., Vennetier, M., 2018, Geographical ecology of dry forest tree communities in the West Indies, Journal of Biogeography 45:1168-1181. DOI:10.1111/jbi.13198
    Glassman, S.I. and J.B.H. Martiny. 2018. Broadscale ecological patterns are robust to use of exact sequence variants versus operational taxonomic units. mSphere. Doi:   10.1128/mSphere.00148-18.
    Glassman, S.I. et al. 2018. Decomposition responses to climate depend on microbial community composition. Proceedings of the National Academy of Sciences. Doi: https://doi.org/10.1073/pnas.1811269115
    Hall S.J., L. Reyes, W. Huang, and P.M. Homyak. 2018. Revisiting the “hole-in-the-pipe” model: Impacts of soil moisture on nitrous and nitric oxide emissions. Journal of Geophysical Research-Biogeosciences 123
    Heintz, J.G.H, L.C. Sweet, C.W. Barrows. (2018) “Microhabitat characteristics and impacts of invasive species for the triple-ribbed milkvetch (Astragalus tricarinatus [FABACEAE]) in the San Bernardino Mountains, CA.” Madrono, 65:175-183
    Hokanson KE, Ellstrand NC, Raybould A. 2018 The integration of science and policy in regulatory decision-making: observations on scientific expert panels deliberating GM crops in centers of diversity. Frontiers in Plant Science 9:1157. doi.org/10.3389/fpls.2018.01157
    Homyak P.M., J.C. Blankinship, E.W. Slessarev, S.M. Schaeffer, S. Manzoni, and J.P. Schimel. 2018. Effects of altered dry-season length and plant inputs on soluble soil carbon. Ecology 99: 2348-2362
    Ibanez, T., G. Keppel, C. Baider, C. Birkinshaw, H. Culmsee, S. Cordell, F. B. Vincent Florens, J. Franklin, C. P. Giardina, T. W. Gillespie, M. Laidlaw, C. M. Litton, T. Martin, R. Ostertag, N. Parthasathy, R. Randrianaivo, M. Randrianjanahary, M. Rajkumar, L. Rasingam, F. Ratovoson, L. Reza, L. Sack, A. Shin-ichiro, E. Webb, T. Whitfeld, R. Zang, P. Birnbaum, 2018, Regional forcing explains local species diversity and turnover on islands in the Indo-Pacific, Global Ecology and Biogeography 27:474-486. DOI: 10.1111/geb.12712.
    Inman, R., Franklin, J., Esque T., Dorn, R., 2018, Spatial sampling bias in the Neotoma paleoecological archives affects species paleo-distribution models, Quaternary Science Reviews 198:115-125. https://doi.org/10.1016/j.quascirev.2018.08.015.  
    Lavagi I, Lovatt C, Santiago LS, Rolshausen PE, Christiano R, Mauk P, Vidalakis G (2018) Dwarfing Commercial Citrus Varieties Using Viroids. Citrograph 9:46-50
    Legumes versus rhizobia: a model for ongoing conflict in symbiosis.  Sachs, J.L., Quides, K.W., Wendlandt, C.E. 2018  New Phytologist 219: 1199-1206.
    McFrederick, Q. S., Vuong, H. Q., & Rothman, J. A. 2018 Lactobacillus micheneri sp. nov., Lactobacillus timberlakei sp. nov. and Lactobacillus quenuiae sp. nov., lactic acid bacteria isolated from wild bees and flowers.  International Journal of Systematic and Evolutionary Microbiology, 68 (6), 1879-1884.                     
    Meikle, W. G., Holst, N., Colin, T., Weiss, M., Carroll, M. J., McFrederick, Q. S., & Barron, A. B. 2018 Using within-day hive weight changes to measure environmental effects on honey bee colonies.  PLoS ONE, 13(5), e0197589.
    MJ Carroll, WG Meikle, QS McFrederick, JA Rothman, N Brown, M Weiss, Z Ruetz, & E Chang. 2018 Pre-almond supplemental forage improves colony survival and alters queen pheromone signalling in overwintering honey bee colonies.  Apidologie, https://doi.org/10.1007/s13592-018-0607-x
    Murphy, S.D., E.B. Allen and R.J. Hobbs. 2018.  Editorial: Restoration Ecology at 25 years: the editors reflect on how we got here. Restoration Ecology 26:1009-1012 doi.org/10.1111/rec.12885
    Nilsson R.H., A. F.S. Taylor, R.I. Adams, C. Baschien, J. Bengtsson-Palme, P. Cangren, C. Coleine, H.M. Daniel, S.I. Glassman et al. 2018. Taxonomic annotation of public fungal ITS sequences from the built environment – a report from an April 10-11, 2017 workshop (Aberdeen, UK). MycoKeys. doi: 10.3897/mycokeys.@.20887
    Pahua, V.J., Stokes, P.J.N., Hollowell, A.C., Regus, J.U., Gano-Cohen, K.A., Wendlandt, C.E., Quides, K.W., Lyu, J. Y., Sachs, J.L.. 2018 Fitness variation among host species and the paradox of ineffective rhizobia Journal of Evolutionary Biology. 31-599-610.
    Palmer-Young, EC, Raffel, TR & McFrederick, QS. 2018 Temperature-mediated inhibition of a bumble bee parasite by an intestinal symbiont.  Proceedings of the Royal Society B, https://doi.org/10.1098/rspb.2018.2041
    Palmer-Young, EC, Raffel, TR & McFrederick, QS. 2018 pH-mediated inhibition of a bumble bee parasite by an intestinal symbiont.  Parasitology, https://doi.org/10.1017/S0031182018001555
    Pennington, M. J., J. A. Rothman, M. B. Jones, Q. S. McFrederick, J. Gan, and J. T. Trumble. 2018. Effects of contaminants of emerging concern on Myzus persicae (Sulzer, Hemiptera: Aphididae) biology and on their host plant, Capsicum annuum. Environmental Monitoring and Assessment 190: 125 (11 pages): doi.org/10.1007/s10661-018-6503-z.
    Pennington, M. J., Rothman, J. A., Jones, M. B., McFrederick, Q. S., Gan, J., & Trumble, J. T. 2018 Effects of contaminants of emerging concern on Myzus persicae (Sulzer, Hemiptera: Aphididae) biology and on their host plant, Capsicum annuum.  Environmental Monitoring and Assessment, 190 (3), 3347.
    Pivovaroff AL, Cook VMW, Santiago LS (2018) Stomatal behaviour and stem xylem traits are coordinated for woody plant species under exceptional drought conditions. Plant, Cell & Environment 41:2617-2626
    R. H. Nilsson, A. F.S. Taylor, R.I. Adams, C. Baschien, J. Bengtsson-Palme, P. Cangren, C. Coleine, H.M. Daniel, S.I. Glassman et al. 2018. Taxonomic annotation of public fungal ITS sequences from the built environment – a report from an April 10-11, 2017 workshop (Aberdeen, UK). MycoKeys 28: 65-92. 
    Rothman, J. A., Carroll, M. J., Meikle, W. G., Anderson, K. E., & McFrederick, Q. S. 2018 Longitudinal effects of supplemental forage on the honey bee (Apis mellifera) microbiota and inter- and intra-colony variability.  Microbial Ecology, 274 (80), 1–11.
    S.I. Glassman and J.B.H. Martiny. 2018. Ecological patterns are robust to use of exact sequence variants versus operational taxonomic units. mSphere 3 (4): e00148-18.
    S.I. Glassman, C. Weihe, J. Li, M.B.N. Albright, C.I. Looby, A.C. Martiny, K.K. Treseder, S.D. Allison, and J.B.H Martiny. 2018. Decomposition responses to climate depend on microbial community composition. Proceedings of the National Academy of Sciences 115 (47): 11994-11999. 
    Santiago LS, De Guzman ME, Baraloto C, Vogenberg J, Brodie M, Hérault B, Fortunel C, Bonal D (2018) Coordination and trade-offs among hydraulic safety, efficiency and drought avoidance traits in Amazonian rainforest canopy tree species. New Phytologist 218:1015-1024
    Scientific American, The Desert Sun and others highlight collaborative research at UCR that finds that many solar farms in California pose a threat to desert life because they are not situated in “potentially compatible” areas that minimize its harm to wildlife.
    Shates, T.M., Sun, P., Malmstrom, C.M., Dominguez, C., Mauck, K.E., 2018. Addressing Research Needs in the Field of Plant Virus Ecology by Defining Knowledge Gaps and Developing Wild Dicot Study Systems. Front. Microbiol. 9, 3305. https://doi.org/10.3389/fmicb.2018.03305 
    Slik, J. W. F., J. Franklin, V. Arroyo-Rodríguez, R. Field, S. Aguilar, N. Aguirre, J. Ahumada, S.-I. Aiba7, L. F. Alves, Anitha K, A. Avella, F. Mora Ardila, G. A. Aymard C., S. Báez, P. Balvanera, M. L. Bastian, J.-F. Bastin, P. J. Bellingham, E. van den Berg, P. da Conceição Bispo, P. Boeckx, K. Boehning-Gaese, F. Bongers, B. Boyle, F. Brambach, F. Q. Brearley, S. Brown, S.-L. Chai, R. L. Chazdon, S. Chen, P. Chhang, G. Chuyong, E. Corneille, I. M. Coronado, J. Cristóbal-Azkarate, H. Culmsee, K. Damas, HS Dattaraja, P. Davidar, S. J. DeWalt, H. Din, D. R. Drake, A. Duque, G. Durigan, K. Eichhorn, E. S. Eler, T. Enoki, A. Ensslin, A. B. Fandohan, N. Farwig, K. J. Feeley, M. Fischer, O. Forshed, Q. Garcia, S. C. Garkoti, T. W. Gillespie, J.-F. Gillet, C. Gonmadje, I. Granzow-de la Cerda, D. M. Griffith, J. Grogan, K. R. Hakeem, D. J. Harris, R. D. Harrison, A. Hector, A. Hemp, J. Homeier, M. S. Hussain, G. Ibarra-Manríquez, F. H. Ibrahim, N. Imai, P. A. Jansen, S. Joseph, K. Kartawinata, E. Kearsley, D. Kelly, M. Kessler, T. J. Killeen, R. Kooyman, Y. Laumonier, S. Laurance, W. Laurance, M. J. Lawes, S. Letcher, J. Lindsell, J. Lovett, J. Lozada, X. Lu, A. M. Lykke, K. Bin Mahmud, N. P. D. Mahayani, A. Mansor, A. R. Marshall, E. H. Martin, D. C. L. Matos, J. A. Meave, F. P. L. Melo, Z. H. A. Mendoza, F. Metali, V. Metjibe, J. P. Metzger, T. Metzker, D. Mohandass, M. A. Munguía-Rosas, R. Muñoz, E. Nurtjahya, E. L. de Oliveira, Onrizal, P. Parolin, M. Parren, N Parthasarathy, E. Paudel, R. Perez, E. A. Pérez-García, U. Pommer, L. Poorter, L. Qi, M. T. F. Piedade, J. R. R. Pinto, A. D. Poulsen, J. Poulsen, J. S. Powers, R. C. Prasad, J.-P. Puyravaud, O. Rangel, J. Reitsma, D. S. B. Rocha, S. Rolim, F. Rovero, A. Rozak, K. Ruokolainen, E. Rutishauser, G. Rutten, M. N. M. Said, F. Z. Saiter, P. Saner, B. Santos, J. R. dos Santos, S. K. Sarker, C. B. Schmitt, J. Schoegart, M. Schulze, D. Sheil, A. F. Souza, W. R. Spironello, T. Sposito, R. Steinmetz, T. Stevart, M. S. Suganuma, R. Sukri, A. Sultana, R. Sukumar, T. Sunderland, Supriyadi, Suresh H. S., E. Suzuki, M. Tabarelli, J. Tang, E. V. J. Tanner, N. Targhetta, I. Theilade, D. Thomas, J. Timberlake, M. de Morisson Valeriano, J. van Valkenburg, T. Van Do, S. Van Hoang, J. H. Vandermeer, H. Verbeeck, O. R. Vetaas, Victor Adekunle, S. A. Vieira, C. Webb, E. Webb, T. Whitfeld, S. Wich, J. Williams, S. Wiser, F. Wittmann, X. Yang, C. Y. A. Yao, S. Yap, R. A. Zahawi, R. Zakaria, R. Zang. 2018, A phylogenetic classification of the world’s tropical forests, Proceedings of the National Academy of Sciences, USA 115(8):1837-1842. www.pnas.org/cgi/doi/10.1073/pnas.1714977115
    Steadman, D. W., Albury N. A., Mead, J. I., Soto-Centeno J. A., Franklin, J., 2018, Holocene vertebrates from a dry cave on Eleuthera Island, Commonwealth of The Bahamas, The Holocene 5:806-813. DOI: 10.1177/0123456789123456.
    Sun, S., S. Dudley, J. T. Trumble, and J. Gan. 2018. Pharmaceutical and personal care products-induced stress symptoms and detoxification mechanisms in cucumber plants. Environmental Pollution 234: 39-47.
    Taniguchi T., Kitajima K., Douhan GW, Yamanaka N., and Allen MF. 2018. A pulse of summer precipitation after the dry season triggers changes in ectomycorrhizal formation, diversity, and community composition in a Mediterranean forest in California, USA. Mycorrhiza 28: 665-677. https://doi.org/10.1007/s00572-018-0859-3 
    Tracey, J.A., Rochester, C., Hathaway, S., Brehme, C., Preston, K., Syphard, A.D., Vandergast, A., Diffendorfer, J., Franklin, J., McKensie, J., Morrison, S., Nichols, G., Oberbauer, T., Spencer, W., Tremor, S., Winchell, C., Fisher, R. N., 2018; Prioritizing conserved areas threatened by wildfire for monitoring and management in Mediterranean-type ecosystems, PLoS One 13(9): e0200203. https://doi.org/10.1371/journal.pone.0200203
    Treseder, K.A.,  E. B. Allen,  L. M. Egerton-Warburton, M. M. Hart, J. N. Klironomos, H. Maherali, and L. Tedersoo. 2018. Arbuscular mycorrhizal fungi might mediate ecosystem responses to nitrogen deposition: A trait-based predictive framework. Journal of Ecology, 106:480–489.
    Vitoria AP, Avila-Lovera E, Vieira TD, do Couto-Santos APL, Pereira TJ, Funch LS, Freitas L, de Miranda LDP, Rodrigues P, Rezende CE, Santiago LS (2018) Isotopic composition of leaf carbon (delta C-13) and nitrogen (delta N-15) of deciduous and evergreen understorey trees in two tropical Brazilian Atlantic forests. Journal of Tropical Ecology 34:145-156
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
     
  • 2017
    • Aciego, SM, CS Riebe, S Hart, MA Blakowski, C Carey, SM Aarons, N Dove, P Austin, and E Aronson. 2017. “Dust outpaces bedrock in nutrient supply to montane forest ecosystems.” Nature Communications. 10.1038/ncomms14800.
    • Allen, M.F. and E.B. Allen. 2017. Mycorrhizal mediation of soil fertility amidst nitrogen eutrophication and climate change. Chapt. 12 In N.C. Johnson, C. Gehring and J. Jansa, eds. Mycorrhizal Mediation of Soil: Fertility, Structure, and Carbon Storage. Elsevier Press, Amsterdam. pp 213-231.
    • Allen, M.F. and E.B. Allen. 2017. Mycorrhizal mediation of soil fertility amidst nitrogen eutrophication and climate change. Chapt. 12, pp 213-231, In N.C. Johnson, C. Gehring and J. Jansa, eds. Mycorrhizal Mediation of Soil: Fertility, Structure, and Carbon Storage. Elsevier Press, Amsterdam.
    • Allen, Michael F., Peter L. Morrell, Charles W. Rice, Henry J. Vaux, Clifford N. Dahm, and Rebecca R. Hernandez. 2017. Challenges and Opportunities for Food and Nutrition Security in the United States. In, Food and Nutrition Security in the Americas: A View from the Academies of Sciences. Michael T. Clegg (coordinator). Inter-American Network of Academies of Sciences. Mexican Academy of Sciences, Mexico City. https://www.ianas.org/docs/books/fnb02b.pdf.
    • Clark, C. J. 2017. eBird records show substantial growth of the Allen's Hummingbird (Selasphorus sasin sedentarius) population in urban Southern California. The Condor: Ornithological Applications. 119: 122-130. doi: 10.1650/CONDOR-16-153.1
    • De La Riva, D. G., K. R. Haldun, B. G. Vindeola, and J. T. Trumble. 2017. Arthropod communities in a selenium-contaminated habitat with a focus on ant species. Environmental Pollution 220: 234-241.
    • De La Riva, D. G., K. R. Haldun, B. G. Vindeola, and J. T. Trumble. 2017. Arthropod communities in a selenium-contaminated habitat with a focus on ant species. Environmental Pollution 220: 234-241.
    • De La Riva, D. G., M. B. Jones and J. T. Trumble. 2017. Evidence for the transfer of a contaminant via a tri-trophic plant-herbivore-ant system. Ecological Entomology: 42:545-552.
    • Ellstrand NC. 2017. Does introgression of crop alleles into wild and weedy living populations create cryptic in situ germplasm banks? Molecular Ecology 27:38-40.
    • Fahimipour, A.K., Anderson, K.E. & Williams, R.J. Theor Ecol (2017). In press. doi:10.1007/s12080-016-0326-8
    • Feng X, Dawson TE, Ackerly DD, Santiago LS, Thompson SE (2017) Reconciling seasonal hydraulic risk and plant water use through probabilistic soil–plant dynamics. Global Change Biology 10.1111/gcb.13640
    • Gillespie TW, J de Goede, L Aguilar, GD Jenerette, GA Fricker, ML Avolio, S Pincetl, T Johnston, LW Clarke, DE Pataki. 2017. Predicting tree species richness in urban forests. Urban Ecosystems In Press
    • Glassman, S.I., I.J. Wang and T.D. Bruns. 2017. Environmental filtering by pH and soil nutrients drives community assembly in fungi at fine spatial scales. Molecular Ecology. Doi: 10.1111/mec.14414.
    • Glassman, S.I., K.C. Lubetkin, J.A. Chung, and T.D. Bruns. 2017. The theory of island biogeography applies to ectomycorrhizal fungi in subalpine tree ‘islands’ at a fine scale. Ecosphere Doi: 10.1002/ecs2.1677
    • Gordon, S. P., A. Lopez-Sepulcre, D. Rumbo, and D. Reznick. Rapid changes in the sex linkage of male coloration in introduced guppy populations. American Naturalist 189: 196-200.
    • Graystock, P, Rehan SM, McFrederick QS. 2017 Hunting for healthy microbiomes: Determining the core microbiome of Ceratina, Apis, and Megalopta bees and how they associate with microbes in bee collected pollen.  Conservation Genetics 18, 701-711.
    • Hoffacker, M. K., M. F. Allen and R. R. Hernandez. 2017. Land sparing opportunities for solar energy development in agricultural landscapes: A case study of the Great Central Valley, CA, USA. Environmental Science & Technology 51: 14472-14482. DOI: 10.1021/acs.est.7b05110
    • Homyak P.M., M.T. Kamiyama†, J.O. Sickman, and J.P. Schimel. 2017. Acidity and organic matter promote abiotic nitric oxide production in drying soils. Global Change Biology 23: 1735-1747
    • Homyak, P.M., S.D. Allison, T.E. Huxman, M.L. Goulden, and K.K. Treseder. 2017. Effects of drought manipulation on soil nitrogen cycling: A meta-analysis. Journal of Geophysical Research-Biogeosciences 122: 3260-3272 * Top downloaded article 2017-2018 JGR: Biogeosciences
    • Hudson, LN and 149 others, including McFrederick, QS. 2017 The database of the PREDICTS (Predicting Responses of Ecological Diversity In Changing Terrestrial Systems) project.  Ecology and Evolution, 7, 145-188.
    • Hulton VanTassel, H. L., Bell, M. D., Rotenberry, J., Johnson, R., & Allen, M. F. (2017). Environmental change, shifting distributions, and habitat conservation plans: A case study of the California gnatcatcher. Ecology and Evolution, 7(23), 10326–10338. https://doi.org/10.1002/ece3.3482
    • Leitner S., P.M. Homyak, J.C. Blankinship, J. Eberwein, D.J. Jenerette, S. Zechmeister-Boltenstern, and J.P. Schimel. 2017. Linking NO and N2O emission pulses with the mobilization of mineral and organic N upon rewetting dry soils. Soil Biology & Biochemistry 115: 461-466
    • M. J. Pennington, S. L. Dudley, J. A. Rothman, M. B. Jones, Q. S. McFrederick, J. Gan, J. T. Trumble. 2017. Contaminants of emerging concern affect Trichoplusia ni (Hübner, Lepidoptera: Noctuidae) growth and development on artificial diets and a key host plant. Proceedings of the National Academy of Sciences: doi/10.1073/pnas.1713385114.
    • McFrederick, QS, Thomas, JM, Neff, JL, Vuong, HQ, Russell, KA, Hale, AR, & Mueller, UG. 2017 Flowers and wild megachilid bees share microbes.  Microbial Ecology, 73, 188-200. http://doi.org/10.1007/s00248-016-0838-1
    • Oikawa PY, GD Jenerette, SH Knox, C Sturtevant, J Ferfaillie, I Dronova, C Poindexter, E Eichelman, DD Baldocchi. In Press. Evaluation of a hierarchy of models reveals importance of substrate limitation for predicting carbon dioxide and methane exchange in restored wetlands. Journal of Geophysical Research - Biogeosciences
    • Pennington, M. J., Rothman, J. A., Dudley, S. L., Jones, M. B., McFrederick, Q. S., Gan, J., & Trumble, J. T. 2017 Contaminants of emerging concern affect Trichoplusia ni growth and development on artificial diets and a key host plant.  Proceedings of the National Academy of Sciences, 114 (46), E9923–E9931.
    • Pennington, M. J., Rothman, J. A., Jones, M. B., McFrederick, Q. S., Gan, J., & Trumble, J. T. 2017 Effects of contaminants of emerging concern on Megaselia scalaris (Lowe, Diptera: Phoridae) and its microbial community.  Scientific Reports, 7 (1).
    • Porter, W.C., Safieddine, S.A., Heald, C.L., 2017. Impact of aromatics and monoterpenes on simulated tropospheric ozone and total OH reactivity. Atmospheric Environment 169, 250–257. https://doi.org/10.1016/j.atmosenv.2017.08.048
    • Regan, H. M., Bohórquez, C. I., Keith, D. A., Regan, T. J. and Anderson, K. E. (2017), Implications of different population model structures for management of threatened plants. Conservation Biology, 31: 459–468. doi:10.1111/cobi.12831
    • Regus, J.U., Wendlandt, C.E., Bantay, R.M., Gano-Cohen, K.A., Gleason, N.J., Hollowell, A.C.,O'Neill, M.R., Shahin, K.K., Sachs, J.L. 2017. Nitrogen deposition decreases the benefits of symbiosis in a native legume 2016.  Plant and Soil. 414: 159-170
    • Rosenthal, L.M., S. Branco, J.A. Chung, S.I. Glassman, H.L. Liao, K.G. Peay, D.P. Smith, J.M. Talbot, J.W. Taylor, E.C. Vellinga, R. Vilgalys, and T.D. Bruns. 2017. Survey of athelioid corticioid fungi in North American pinaceous forests reveals hyperdiversity, underpopulated sequence databases, and species that are potentially ectomycorrhizal. Mycologia Doi: 10.1080/00275514.2017.1281677
    • Sarhad, J., Manifold, S. & Anderson, K.E. J. Math. Biol. (2017) 74: 981. doi:10.1007/s00285-016-1045-x
    • Schaeffer S.M., P.M. Homyak, C.M. Boot, D. Roux-Michollet, and J.P. Schimel. 2017. Soil carbon and nitrogen dynamics throughout the summer drought in a California annual grassland. Soil Biology & Biochemistry 115: 54-62
    • Shiflett S, LL Liang, S Crum, GL Feyisa, J Wang, and GD Jenerette. 2017. Variation in the urban vegetation, air temperature, surface temperature nexus. Science of the Total Environment 579:495-505
    • Stav Livne-Luzon, O. Ovadia, G. Weber, Y. Avidan, H. Migael, S. I. Glassman, T. D. Bruns, and H. Shemesh. 2017. Small-scale spatial variability in the distribution of ectomycorrhizal fungi affects plant performance and fungal diversity. Ecology Letters 20 (9): 1192-1202.
    • Steadman, D. W. and Franklin, J., 2017, Origin, paleoecology and extinction of bluebirds and crossbills in the Bahamas across the last glacial-interglacial transition, Proceedings of the National Academy of Sciences, USA 114(37): 9924-9929. www.pnas.org/cgi/doi/10.1073/pnas.1707660114
    • Steadman, D. W., Singleton, H. M., Delancy, K. M., Albury, N. A., Soto-Centeno, J. A., Gough, H., Duncan, N., Franklin, J., and Keegan, W. F., 2017, Late Holocene historical ecology: The timing of vertebrate extirpation on Crooked Island, Commonwealth of the Bahamas, Journal of Island and Coastal Archaeology 12(4):572-584. http://dx.doi.org/10.1080/15564894.2017.1305469
    • Sweet, L.C. and E. H. Hiroyasu. “Larger seed size may lead to increased drought stress and mortality for Quercus douglasii seedlings under drought conditions.” Submitted to Journal of Experimental Botany, February 2017
    • Sweet, L.C., C. Barrows, R. Johnson, J. Heintz, R. Merizan. (2017) Coachella Valley Multiple Species Habitat Conservation Plan & Natural Community Conservation Plan: Coachella Valley Stormwater Channel and Delta Conservation Area Vegetation Map Report. Final Report. Prepared for: Coachella Valley Conservation Commission.
    • Sweet, L.C., C. Barrows, R. Johnson, J. Heintz, R. Merizan. (2017) Coachella Valley Multiple Species Habitat Conservation Plan & Natural Community Conservation Plan: CVMSHCP Areas within Sand to Snow National Monument Vegetation Map Report. Final Report. Prepared for: Coachella Valley Conservation Commission.
    • Sweet, L.C., C. Barrows, R. Johnson, J. Heintz, R. Merizan. (2017) Coachella Valley Multiple Species Habitat Conservation Plan & Natural Community Conservation Plan: Desert Tortoise and Linkage Conservation Area Vegetation Map Report. Final Report. Prepared for: Coachella Valley Conservation Commission.
    • Valliere, J.M., I.C. Irvine, L. S. Santiago and E.B. Allen. 2017. High N, dry: Experimental nitrogen deposition exacerbates native shrub loss and invasion during extreme drought. Global Change Biology 23:4333-4345. doi.org/10.1111/gcb.13694
    • Valliere, J.M., I.C. Irvine, L. S. Santiago and E.B. Allen. 2017. High N, dry: Experimental nitrogen deposition exacerbates native shrub loss and invasion during extreme drought. Global Change Biology. In press.
    • VanTassel, H.L.H., Bell, M.D., Rotenberry, J., Johnson, R. and Allen, M.F. 2017. Environmental change, shifting geographical distributions, and habitat conservation plans:  A case study of the California Gnatcatcher. Ecology and Evolution 2017; 1-13. DOI: 10.1002/ece3.3482
    • Woodard, S. H. (2017). Bumble bee ecophysiology: integrating the changing environment and the organism. Current opinion in insect science, 22, 101-108.
  • 2016
    • Allen, E.B., L.M. Egerton-Warburton, B. E. Hilbig, and J.M. Valliere. 2016. Interactions of arbuscular mycorrhizal fungi, critical load of nitrogen deposition, and shifts from native to invasive species in a southern California shrubland. Botany 94:425-433. dx.doi.org/10.1139/cjb-2015-0266
    • Allen, M.F. 2016. If you want to understand nature, stick your head in the sand! LA+ Journal of Landscale Architecture.
    • Ávila-Lovera, E., and E. Ezcurra. 2016. Stem-Succulent Trees from the Old and New World Tropics. In: G. Goldstein and L.S. Santiago (eds.) Tropical Tree Physiology. Adaptations and Responses in a Changing Environment. Springer, New York. Pp. 45–65. DOI: 10.1007/978-3-319-27422-5_3
    • Banet, A. I., J. C. Svendsen, K. J. Eng and D. N. Reznick. Linking reproduction, locomotion, and habitat use in the Trinidadian guppy (Poecilia reticulata). Oecologia 181: 87-96.
    • Barrows, C.W., B.T. Henen, and A.E. Karl. 2016. Identifying climate refugia: A framework to inform conservation strategies for Agassiz’s desert tortoise in a warmer future. Chelonian Conservation and Biology 15(1):2-11.
    • Barrows, C.W., Hoines, J., Vamstad, M.S., Murphy-Mariscal, M.L., Lalumiere, K., Heintz, J. 2016. Measuring the value of citizen scientists for assessing climate change impacts across desert ecoregions. Biological Conservation 195:82-88.
    • Barrows, C.W., Murphy-Mariscal, M.L., Hernandez, R.R. 2016. At a crossroads: The nature of natural history in the 21st century. BioScience 66:592-599.
    • Bassar, R. D., D. Z. Childs, M. Rees, S. Tuljapurkar, D. N. Reznick and T. Coulson. The effects of asymmetric competition on the life history of Trinidadian guppies. Ecology Letters 19: 268-278.
    • Burden, C. M., C. Elmore, K. R. Hladun, J. T. Trumble, and B. H. Smith. 2016. Acute exposure to selenium disrupts associative conditioning and long-term memory recall in honey bees (Apis mellifera L.). Ecotoxicology and Environmental Safety 127: 71–79.
    • C. M. Briggs and R. A. Redak. 2016. Seed Selection by the Harvester Ant Pogonomyrmex rugosus (Hymenoptera: Formicidae) in Coastal Sage Scrub: Interactions with Invasive Plant Species. Environmental Entomology. In Press.
    • Campanello PI, Manzané E, Villagra M, Zhang Y-J, Panizza AM, di Francescantonio D, Rodriguez SA, Chen Y-J, Santiago LS, Goldstein G (2016) Carbon allocation and water relations of lianas versus trees. In: Goldstein G, Santiago LS (eds) Tropical
    • Tree Physiology: adaptations and responses in a changing environment. Springer International, Switzerland, pp 103-124
    • Carey, CJ, NC Dove, JM Bemen, SC Hart, and EL Aronson. “Meta-analysis reveals ammonia-oxidizing bacteria respond more strongly to nitrogen addition than ammonia-oxidizing archaea” (in revision with) Ecology Letters.
    • Carey, CJ, SC Hart, S Aciego, C Riebe, M Blakowski, and EL Aronson. "Microbial community structure of subalpine snow in the Sierra Nevada, California," (in revision with) Arctic, Antarctic and Alpine Research.
    • Collen, B., N.K. Dulvy, K.J. Gaston, U. Gärdenfors, D.A. Keith, A.E. Punt, H.M. Regan, M. Böhm, S. Hedges, M. Seddon, S.H.M. Butchart, C. Hilton-Taylor, M. Hoffmann, S.P. Bachman, H.R. Akçakaya. Clarifying misconceptions of extinction risk assessment with the IUCN Red List. Biology Letters. 12: 20150843. http://dx.doi.org/10.1098/rsbl.2015.0843, 2016.
    • Collins, C, CJ Carey, EA Aronson, and J Diez. “Soil community and ecosystem impacts of native species range expansions,” (in review with) Journal of Ecology.
    • Collins CG, CJ Carey, EL Aronson, CW Kopp, & JM Diez. 2016. “Direct and indirect effects of native range expansion on soil microbial community structure and function.” Journal of Ecology. 10.1111/1365-2745.12616.
    • Cornwell WK, Wright IJ, Turner J, Maire V, Barbour MM, Cernusak LA, Dawson TE, Ellsworth DS, Farquhar GD, Griffiths H, Keitel C, Knohl A, Reich PB, Williams DG, Bhaskar R, Cornelissen JHC, Richards A, Schmidt S, Valladares F, Körner C, Schultze E-D, Buchmann N, Santiago LS (in press) A global dataset of leaf delta 13C values. Scientific Data
    • Crum S, LL Liang, GD Jenerette. 2016. Landscape position influences soil respiration variability and sensitivity to physiological drivers in mixed-use lands of southern California, USA. Journal of Geophysical Research – Biogeosciences 121:2530-2543 doi:10.1002/2016JG003469
    • Davis, F.W., L.C. Sweet, J. Serra-Diaz, I. McCullough, J. Dingman, L. Flint, A. Flint, J. Franklin, A. Syphard, H. Regan, M. Moritz, K. Redmond, L. Hannah, V. Sork. (2016) “Shrinking windows of opportunity for oak seedling establishment in southern California mountains.” Ecosphere. 7(11): Article e01573
    • De Guzman ME, Santiago LS, Schnitzer SA, Álvarez-Cansino L (2016) Trade-offs between water transport capacity and drought resistance in neotropical canopy liana and tree species. Tree Physiology doi:10.1093/treephys/tpw086
    • De La Riva, D., and J. T. Trumble. 2016. Selenium exposure results in reduced reproduction in an invasive ant species and altered competitive behavior for a native ant species. Environmental Pollution 213: 888-894.
    • Delgado-Fernández, M., P. P. Garcillán, and E. Ezcurra. 2016. On the age and growth rate of giant cacti: Radiocarbon dating of the spines of cardon (Pachycereus pringlei). Radiocarbon 58(3): 479–490.
    • Di, N., K. R. Hladun, K. Zhang, T.-X. Liu, and J. T. Trumble. 2016. Laboratory bioassays on the impact of cadmium, copper and lead on the development and survival of honeybee (Apis mellifera L.) larvae and foragers. Chemosphere 152: 530-538.
    • Dial, T. R., D. N. Reznick and E. L. Brainerd. Effects of neonatal size on maturity and escape performance in the Trinidadian guppy. Functional Ecology 30: 943-952.
    • Ellstrand NC, Rieseberg LH. [co-editors] 2016. “Special Issue: Gene Flow and Applied Evolutionary Biology. Evolutionary Applications 9:661-806.
    • Ellstrand NC, Rieseberg LH. 2016. When gene flow matters: gene flow in applied evolutionary biology. Evolutionary Applications 9: 833-836.
    • Enders, L.S. and L. Nunney. 2016. Reduction in the cumulative effect of stress-induced inbreeding depression due to intra-generational purging in Drosophila melanogaster. Heredity 116: 304-313.
    • Ezcurra, E. 2016. Commentary: Anthropogenic disturbances infiltrate forest fragments. Proceedings of the National Academy of Sciences 113(19): 5150–5152.
    • Ezcurra, P., E. Ezcurra, P. P. Garcillán, M. T. Costa, and O. Aburto-Oropeza. 2016. Coastal landforms and accumulation of mangrove peat increase carbon sequestration and storage. Proceedings of the National Academy of Sciences 113(16): 4404–4409.
    • Ezcurra, E. 2016. Currents of life. In: F. Schulz (ed.) The Wild Edge: Freedom to Roam the Pacific Coast. Braided River, Mountaineers Books, Seattle, Washington. Pp. 11–13.
    • Ezcurra, E. 2016. Manglares. In: Editors: J. Sarukhán and I. Pisanty (eds.) Capital Natural de México, Tomo IV. CONABIO, Mexico. 5p. (available at: http://ezcurralab.ucr.edu/eezcurra/publications/papers/128.pdf.
    • Ezcurra, E. 2016. Prólogo. In: Gómez-Pompa, A. Mi Vida en las Selvas Tropicales: Memorias de un Botánico. Imprenta Rebosán Editores, Tlapan, México. Pp. 13-14. (available online at: https://www.reservaeleden.mx/).
    • “Studying Up After Studying Down: Dilemmas of Research on South African Conservation Professionals,” Critical African Studies. Published online 26 October 2016, http://dx.doi.org/10.1080/21681392.2016.1245106 . Derick Fay
    • Feyisa GL, H Meilby, GD Jenerette, and S Pauliet. 2016. Separability-optimized indices for accurate land cover mapping and surface heat assessment: Environmental consequences of rapid urbanization in Addis Ababa, Ethiopia. Remote Sensing of the Environment 14-31
    • Fisher, M. and Barrows C.W. 2016. Desert sand dunes. In Jones, L.L.C., Halama, K.J., and Lovich, R.E. (Eds). Habitat Management Guidelines for Amphibians and Reptiles in the Southwestern United States. Partners in Amphibian and Reptile Conservation, Birmingham, AL. Technical Publication HMG-5, 193pp
    • Fizpatrick, S. W., J. C. Gerberich, L. M. Angeloni, L. L. Bailey, E. D. Broder, J. Torres- Dowdall, C. A. Handelsman, A. Lopez-Sepulcre, D. N. Reznick, C. K. Ghalambor, and W. C. Funk. Gene flow from an adaptively divergent source causes genetic rescue, not outbreeding depression, in two wild populations of Trinidadian guppies. Evolutionary Applications 9: 879-891.
    • Flecker. Fish introductions and light modulate food web fluxes in tropical streams: a whole-ecosystem experimental approach. Ecology 97:3154-3166.
    • Franklin, J., J.M. Serra-Diaz, A.D. Syphard and H.M. Regan. 2016. Big data for forecasting global change impacts on plant communities.Global Ecology and Biogeography. 26(1): 6-17, 2016.
    • Franklin, J., J.M. Serra-Diez, A.D. Syphard and H.M. Regan. Global change and terrestrial plant community dynamics.Proceedings of the National Academy of Sciences. 113(14):3725-3734, 2016.
    • Furness, A. I., D. N. Reznick and J. C. Avise. Ecological, evolutionary and human-mediated determinants of species richness in Caribbean Poeciliid fishes. J. Biogeography 43: 1349-1359.
    • Glassman, S.I., C.R. Levine, A.M. DiRocco, J.J. Battles, and T.D. Bruns. 2016. Ectomycorrhizal fungal spore bank recovery after a severe forest fire: Some like it hot. ISME J 10(5): 1228-1239. Glassmanetal_ISME_2016_supplementary
    • Goldberg, J.F., Tempa, T., Norbu, N., et al. 2015. Examining temporal sample scale and model choice with spatial capture-recapture models in the common leopard Panthera pardus. PLOS ONE: e0140757.
    • Goldstein G, Santiago LS (eds) (2016) Tropical Tree Physiology: adaptations and responses in a changing environment. Springer International, Switzerland
    • Goldstein G, Santiago LS, Campanello PI, Avalos G, Zhang Y-J, Villagra M (2016) Facing shortage or excessive light: how tropical and subtropical trees adjust their photosynthetic behavior and life history traits to a dynamic forest environment. In: Goldstein G, Santiago LS (eds) Tropical Tree Physiology: adaptations and responses in a changing environment. Springer International, Switzerland, pp 319-336
    • Heraty JM, Ellstrand NC 2016. Maize germplasm conservation in Southern California’s urban gardens: Introduced diversity beyond ex situ and in situ management. Economic Botany 70:37-48.
    • Higham, T. E., S. M. Rogers, R. B. Langerhans, et al. Speciation through the lens of biomechanics: locomotion, prey capture and reproductive isolation. Proceedings of the Royal Society B-Biological Sciences 283, Article No. 20161294.
    • Hladun, K.R., N. Di, T.-X. Liu, and J.T. Trumble. 2016. Metal contaminant accumulation in the hive: consequences for whole colony health and brood production in the honey bee (Apis mellifera L.). Environmental Toxicology and Chemistry. 35: 322-329.
    • Hokanson KE, Ellstrand NC, Dixon AGO, Kulembeka HP, Olsen KM, Raybould A. 2016 Risk assessment of gene flow from genetically engineered virus resistant cassava to wild relatives in Africa: an expert panel report. Transgenic Research. 25: 71-81.
    • Homyak P.M., J.C. Blankinship, K. Marchus, D.M. Lucero, J.O. Sickman, and J.P. Schimel. 2016. Aridity and plant uptake interact to make dryland soils hotspots for nitric oxide (NO) emissions. Proceedings of the National Academy of Sciences of the United States of America  113(19): E2608-E2616 * Awarded the Gene E. Likens Award of the Ecological Society of America Biogeosciences section
    • Hovel, K.A. and H.M. Regan. Using individual-based models to explore seascape ecology. In Seascape Ecology: Taking Landscape Ecology into the Sea. S.J. Pittman (ed.) John Wiley & Sons Ltd., UK. Accepted.
    • Jenerette GD, LW Clarke, ML Avolio, DE Pataki, TW Gillespie, S Pincetl, J McFadden, D Nowak, L Hutyra, M McHale, and M Alonzo. 2016. Climate tolerances and trait choices shape continental patterns of urban tree biodiversity. Global Ecology and Biogeography 25:1367-1376
    • Jenerette GD, SL Harlan, A Buyantuev, WL Stefanov, J Declet-Barreto, BL Ruddell, S Myint, S Kaplan, and X Li. 2016. Micro scale urban surface temperatures are related to land cover features and heat related health impacts in Phoenix, AZ USA. Landscape Ecology 31:745-760
    • Liang LL, DA Grantz, and GD Jenerette. 2016. Multivariate regulation of CO2 and N2O pulse emissions from agricultural soils. Global Change Biology 22:1286-1298
    • Lu BR, Ellstrand NC. 2016. Fitness correlates of crop transgene flow into weedy populations: a case study of weedy rice in China and other examples. Evolutionary Applications 9: 857-870.
    • Molina-Martinez*, A., J.L. Leon-Cortes, H.M. Regan, O.T. Lewis, D. Navarette, A. Luis-Martinez. Elevational shifts in butterfly species distribution in a Neotropical Mountain range. Diversity and Distributions. 22(11): 1085–1098, 2016.
    • Morris, S.J., C.F. Friese, and M.F. Allen. 2016. 4. Disturbance in natural ecosystems: scaling from fungal diversity to ecosystem functioning. In: I.S. Druzhinina and C.P. Kubicek (eds) Environmental and Microbial Relationships, 3rd Edition, The Mycota IV. Springer International Publishing Switzerland.
    • Nunney, L. 2016. The effect of neighborhood size on effective population size in theory and in practice. Heredity. 117: 224-232.
    • Nunney, L. 2016. Adapting to a changing environment: modeling the interaction of directional selection and plasticity. J. Hered. 107: 15-24
    • Pennington, M.J., S.M. Prager, W.E. Walton, and J.T. Trumble. 2016. Culex quinquefasciatus larval microbiomes vary with instar and exposure to common wastewater contaminants. Nature Scientific Reports 6:21969 | DOI: 10.1038/srep21969.
    • Pivovaroff AL, Burlett R, Lavigne B, Cochard H, Santiago LS, Delzon S (2016) Testing the 'microbubble effect' using the Cavitron technique to measure xylem water extraction curves. AoB plants 8: plw011; doi:10.1093/aobpla/plw011
    • Pivovaroff AL, Pasquini SC, De Guzman ME, Alstad KP, Stemke J, Santiago LS (2016) Multiple strategies for drought survival among woody plant species. Functional Ecology 30:517–526
    • Pivovaroff AL, Santiago LS, Vourlitis GL, Grantz DA, Allen MF (2016) Plant hydraulic responses to long-term dry season nitrogen deposition alter drought tolerance in a Mediterranean-type ecosystem. Oecologia DOI: 10.1007/s00442-016-3609-2
    • Pivovaroff AL, Santiago LS, Vourlitis GL, Grantz DA, Allen MF (2016) Plant hydraulic responses to long-term dry season nitrogen deposition alter drought tolerance in a Mediterranean-type ecosystem. Oecologia:721–731
    • Proffitt, K., Goldberg, J.F., Hebblewhite, M., et al. 2015. Integrating resource selection into spatial capture-recapture models for large carnivores. Ecosphere 6: 239.
    • Regan H.M., C. Bohorquez*, T.J. Regan, D.A. Keith and K.E. Anderson. Implications of different population model structures for management of threatened plants. Conservation Biology. 31(2): 459-468, 2017.
    • Reznick, D. N. Experimental studies of life history evolution in guppies. Pp. xx-xx in Encyclopedia of Evolutionary Biology, Tim Coulson, Editor. Elsevier, London.
    • Reznick, D. N. Hard and soft selection revisited: how evolution by natural selection works in the real world. J. of Heredity 107, S1: 3-14.
    • Riesch, R., D. N. Reznick, M. Plath and I. Schlupp. Sex-specific local life-history adaptation in surface- and cave-dwelling Atlantic mollies (Poecilia Mexicana). Scientific Reports 6: Article 22968, doi:10.1038/srep22968.
    • Rubio-Cisneros, N.T., O. Aburto-Oropeza, and E. Ezcurra. 2016. Small-scale fisheries of lagoon estuarine complexes in Northwest Mexico. Tropical Conservation Science 9(1): 78–134.
    • Sack L, Ball MC, Brodersen C, Davis SD, Des Marais DL, Donovan LA, Givnish TJ, Hacke UG, Huxman TE, Jansen S, Jacobsen AL, Johnson D, Koch GW, Maurel C, McCulloh KA, McDowell NG, McElrone AJ, Meinzer FC, Melcher PJ, North G, Pellegrini M, Pockman WT, Pratt RB, Sala A, Santiago LS, Savage JA, Scoffoni C, Sevanto S, Sperry JS, Tyreman SD, Way D, Holbrook NM (2016) Plant hydraulics as a central hub integrating plant and ecosystem function: meeting report for “Emerging Frontiers in Plant Hydraulics” (Washington, DC, May 2015). Plant, Cell & Environment doi: 10.1111/pce.12732
    • Santiago LS, Bonal D, De Guzman ME, Ávila-Lovera E (2016) Drought Survival Strategies of Tropical Trees. In: Goldstein G, Santiago LS (eds) Tropical Tree Physiology: adaptations and responses in a changing environment. Springer International, Switzerland, pp 243-258
    • Santiago LS, De Guzman ME, Bonal D, Baraloto C, Vogenberg J, Brodie M (2016) Hydraulic Traits of Amazonian Canopy Tree Species: Empirical Parameterizations for Earth System Models In: American Geophysical Union, Fall MeetingAbstract B31G-0542
    • Santiago LS, Goldstein G (2016) Is photosynthesis nutrient limited in tropical trees. In: Goldstein G, Santiago LS (eds) Tropical Tree Physiology: adaptations and responses in a changing environment. Springer International, Switzerland, pp 299-315
    • Serra-Diaz, J., J. Franklin, L.C. Sweet, I. McCullough, A.D. Syphard, H. Regan, L. Flint, A. Flint, J. Dingman, M.A. Moritz, K. Redmond, L. Hannah, F.W. Davis. (2016) “Averaged 30 year climate change projections mask opportunities for species establishment." Ecography. 39: 844–845.
    • Serra-Diaz, J.M., Franklin, J., Sweet, L.C., McCullough, I.M., Syphard, A.D, Regan, H.M, Flint, L.E., Flint, A.L, Dingman, J.R., Moritz, M., Redmon, K., Hannah, L., Davis. F.W. Averaged 30 year climate change projections mask opportunities for species establishment. Ecography 38: (in press), 2015. DOI: 10.1111/ecog.02074
    • Shen W, GD Jenerette, RL Scott, and D Hui. 2016. Precipitation legacy effects on dryland ecosystem carbon fluxes: direction, magnitude and biogeochemical carryovers. Biogeosciences 13:425-439
    • Simkin, S.M., E. B. Allen, W. D. Bowman, C. M., Clark, J. Belnap, M.L. Brooks, B.S. Cade, S. L. Collins, L. H. Geiser, F. S. Gilliam, S. E. Jovan, L. H. Pardo, B. K. Schulz, C.J. Stevens, K. N. Suding, H. L. Throop, and D. M. Waller. 2016. Conditional vulnerability of plant diversity to atmospheric nitrogen deposition across the USA. Proceedings of the National Academy of Sciences 113:4086-4091. www.pnas.org/cgi/doi/10.1073/pnas.1515241113
    • Sweet, L. C. California Invasive Plant Council– Invasive Plant Inventory: Plant Assessment Form for Carrichtera annua. Submitted for review December 2016.
    • Sweet, L. C. (2016) “WMAs, who needs ‘em? The low desert, for one.” Cal-IPC News. Summer 2016. 24(2):11
    • Sweet, L. C. California Invasive Plant Council– Invasive Plant Inventory: Plant Assessment Form for Chrysanthemoides monilifera ssp. monilifera. Submitted for review January 2016.
    • Sweet, L.C., C. Barrows, R. Johnson, J. Heintz, R. Merizan. (2016) Coachella Valley Multiple Species Habitat Conservation Plan & Natural Community Conservation Plan: Dos Palmas Conservation Area Vegetation Map Report. Final Report. Prepared for: Coachella Valley Conservation Commission.
    • Tayyebi A and GD Jenerette. 2016. Increases in the climate change adaption effectiveness and availability of vegetation across a coastal to desert climate gradient in metropolitan Los Angeles, CA, USA. Science of the Total Environment 548-549:60-71
    • Valliere, J.M. and E.B. Allen. 2016. Interactive effects of nitrogen deposition and drought-stress on plant-soil feedbacks of Artemisia californica seedlings. Plant and Soil 403:277-290.
    • Valliere, J.M. and E.B. Allen. 2016. Nitrogen enrichment contributes to positive feedback of soil on three invasive plant species. Biological Invasions 18:2349–2364.
    • Vanderplank S., B. T. Wilder, and E. Ezcurra. 2016. Arroyo la Junta: Una joya de biodiversidad en la Reserva de la Biosfera Sierra La Laguna / A biodiversity jewel in the Sierra La Laguna Biosphere Reserve. Botanical Research Institute of Texas, Next Generation Sonoran Desert Researchers, and UC MEXUS. 159 pg.
    • Vanderplank, S. E., and E. Ezcurra. 2016. Marine influence controls plant phenological dynamics in Mediterranean Mexico. Journal of Plant Ecology 9(4): 410-420.
    • Vitoria AP, Vieira TdO, Camargo PdB, Santiago LS (2016) Using leaf δ13C and photosynthetic parameters to understand acclimation to irradiance and leaf age effects during tropical forest regeneration. Forest Ecology and Management 379:50-60
    • Vollmer, D., Regan, H.M. and Andelman, S.J. Assessing the sustainability of freshwater systems: A critical review of composite indicators. Ambio. 45(7):765-780, 2016.
    • Wehncke, E. V., J. R. Lara-Lara, S. Álvarez-Borrego, and E. Ezcurra (editors) 2016. Conservation Science in Mexico’s Northwest: Ecosystem Status and Trends in the Gulf of California. UC Institute for Mexico and the United States (UC MEXUS) and Instituto Nacional de Ecología y Cambio Climático (INECC), Mexico, D.F. doi: 10.13022/M3QG60; ISBN: 978-1-4951-2222-4
    • Xiao, W., Feng. L., Mou, P., Miquelle, D.G., Hebblewhite, M., Goldberg, J.F., et al. In press. Estimating abundance and density of Amur tigers along the Sino-Russian border. Integrative Zoology.
  • 2015
    • Aburto-Oropeza, O., E. Ezcurra, J. Moxley, A. Sánchez-Rodríguez, I. Mascareñas-Osorio, C. Sánchez-Ortiz, B. Erisman, and T. Ricketts. 2015. A framework to assess the health of rocky reefs linking geomorphology, community assemblage, and fish biomass. Ecological Indicators 52: 353–361.
    • Alejandra Martínez-Berdeja, E. Ezcurra, and A. C. Sanders. 2015. Delayed seed dispersal in California deserts. Madroño 62(1): 21–32. doi: 10.3120/0024-9637-62.1.21.
    • Allen, M.F. 2015. How oaks respond to water. pp 13-22 In Standiford, R. B.; Purcell, K. L., tech. cords. 2015. Proceedings of the seventh California oak symposium: managing oak woodlands in a dynamic world. Gen. Tech. Rep. PSW-GTR-251. Berkeley, CA: U.S. Department of Agriculture, Forest Service, Pacific Southwest Research Station. 579 p.
    • Ali AA, Xu C, Rogers A, McDowell NG, E. MB, Fisher R, Wullschleger SD, Reich PB, Vrugt JA, Baurle WL, Santiago LS, Wilson CJ (2015) Global scale environmental control of plant photosynthetic capacity. Ecological Applications 25:2349-2365
    • Avolio ML, DE Pataki, S Pincetl, T Gillespie, GD Jenerette, and HR McCarthy. 2015. Understanding preferences for tree attributes: the relative effects of socio-economic and local environmental factors. Urban Ecosystems 18:73-86
    • Avolio ML, DE Pataki, TW Gillespie, Jenerette GD, HR McCarthy, S Pincetl, and LW Clarke. 2015. Tree diversity in southern California’s urban forest: the interacting roles of social and environmental variables. Frontiers in Ecology and Evolution
    • Barrows, C.W., Henen, B.T., Karl, A.E. Identifying Climate Refugia: a Framework to Inform Conservation Strategies for Agassiz’s Desert Tortoise in a Warmer Future. Chelonian Conservation and Biology. (Accepted 11/03/2015)
    • Bassar, R. D., T. Heatherly, M. C. Marshall, S. A. Thomas, A. S. Flecker and D.N. Reznick. Population size-structure-dependent fitness and ecosystem consequences in Trinidadian guppies. J. Animal Ecology 84: 955-968.
    • Bell, C.E., E.B. Allen, K.A.Weathers, and M. McGiffen Jr. 2015. Simple approaches to improve restoration of coastal sage scrub habitat in Southern California. Natural Areas Journal 36: 20-28.
    • Blog post I co-authored on analyzing ITS fungal amplicons: https://www.microbe.net/2015/03/05/fungal-amplicons/
    • Bytnerowicz A, R Johnson, L Zhang, GD Jenerette, S Schilling, M Fenn, and I Gonzalez-Fernandez. 2015. An empirical inferential method of estimating nitrogen deposition to Mediterranean-type ecosystems: the San Bernardino Mountains case study. Environmental Pollution 203:69-88
    • Bytnerowicz, A., R.F. Johnson, L. Zhang, G. D. Jenerette, M.E. Fenn, S.L. Schilling, and I. Gonzalez-Fernandez 2015 A GIS-based empirical inferential method of estimating deposition of inorganic reactive nitrogen to forests and other ecosystems - the San Bernardino Mountains case study. Environmental Pollution, (Accepted)
    • Chatterjee A and GD Jenerette. 2015. Variation in soil organic matter accumulation and metabolic activity along an elevation gradient in the Santa Rosa Mountains of Southern California, USA. Journal of Arid Land 7:814-819
    • Clarke LW and GD Jenerette. 2015. Biodiversity and direct ecosystem service regulation in the community gardens of Los Angeles, CA. Landscape Ecology 30:367-653
    • Cohen, S. N.*, J. U. Regus, Y. Reynoso, T. Mastro* and D. N. Reznick. Comparative life histories of fishes in the subgenus Limia (Pisces: Poeciliidae). J. of Fish Biology 87: 100-114.
    • Conlisk, E., A.D. Syphard, J. Franklin, and H.M. Regan. Predicting the impact of fire on a vulnerable multi-species community using a dynamic vegetation model. Ecological Modelling 301:27-39, 2015
    • Dickens, S.J.M., E.B. Allen, L.S. Santiago, and D. Crowley. 2015. Extractable N and microbial community structure respond to grassland restoration regardless of historical context and soil composition. AoB Plants 7: plu085
doi: 10.1093/aobpla/plu085.
    • Eberwein JR, PY Oikawa, LA Allsman, and GD Jenerette. 2015. Carbon availability regulates soil respiration response to nitrogen and temperature. Soil Biology and Biochemistry 88:158-164
    • El-Sabaawi, R. W., R. D. Bassar, C. Rakowski, M. C. Marshall, B. L. Bryan, S. N. Thomas, C. Pringle, D. N. Reznick and A. Flecker. Intraspecific phenotypic differences in fish affect ecosystem processes as much as bottom-up factors. Oikos 124: 1181-1191.
    • El-Sabaawi, R., J. Travis, E. Zandona, P. B. McIntyre, D. N. Reznick and A. Flecker. Intraspecific variability modulates interspecific variability in organismal stoichiometry. Ecology and Evolution 4: 1505-1515
    • Exploitation of mutualisms J. L. Sachs . 2015 in: Bronstein, J., ed. Mutualism, Oxford University Press., Oxford. In press
    • Fahimipour, A.K. and K.E. Anderson. 2015. Colonisation rate and flexible foraging control the emergence of trophic cascades. Ecology Letters 18: 826-833.
    • Fraser, B. A., A. Kunster, D. N. Reznick, C. Dreyer and D. Weigel. Population genomics of natural and experimental populations of guppies. Molecular Ecology 24: 389-408.
    • Furness, A. I., D. N. Reznick, M. S. Springer, and R. W. Meredith. Convergent evolution of alternative developmental trajectories associated with diapause in African and South American killifish. Proceedings of the Royal Society B-Biological Sciences 282, DOI: 10.1098/rspd.doiv.2189.
    • Furness, A. I., K. Lee and D. N. Reznick. Adaptation in a variable environment: phenotypic plasticity and bet-hedging during egg diapause and hatching in annual killfish. Evolution 69: 1461-1475.
    • Furness, A. I., K. R. Morrison, T. J. Orr, J. Arendt and D. N. Reznick. Reproductive mode and the shifting arenas of evolutionary conflict. Pp. 75-100 in The Year in Evolution, Annals of the NY Academy of Sciences 1360.
    • García-De La Peña, C., C. Barrows, H. Gadsden, M. Fisher, G. Castañeda & U. Romero-Méndez. 2015. Conservation Challenges In Mexico: Developing a protection strategy for the threatened sand dunes of Coahuila’s La Laguna. Chapter 3, pp. 81-97, In: J. Galindo (ed.), Mexico in Focus: Political, Environmental and Social Issues. Nova Science Publishers, Inc. Hauppauge, New York, USA
    • Ghalambor, C. K., K. L. Hoke, E. W. Ruell, E. K. Fischer, D. N. Reznick and K. A. Hughes. Non-adaptive plasticity potentiates rapid adaptive evolution of gene expression in nature. Nature: DOI: 10.1038/nature15256.
    • Glassman, S.I., K.G. Peay, J.M. Talbot, D.P. Smith, J.A. Chung, J.W. Taylor, R. Vilgalys, and T.D. Bruns. 2015. A continental view of pine-associated ectomycorrhizal fungal spore banks: a quiescent functional guild with a strong biogeographic pattern. New Phytologist 205(4):1619-1631.
    • Gorai M, Laajili W, Santiago LS, Neffati M (2015) Rapid recovery of photosynthesis and water relations following soil drying and re-watering is related to the adaptation of desert shrub Ephedra alata subsp. alenda (Ephedraceae) to arid environments. Environmental and Experimental Botany 109:113-121
    • Gordon, S. P., D. Reznick, J. D. Arendt, A. Roughton*, M. N. Onteveros Hernandez*, P. Bentzen and A. Lopez-Sepulcre. Selection analysis on the rapid evolution of a secondary sexual trait. Proceedings of the Roydal Society B-Biological Sciences 282:
    • Hardy, B.M., K.L. Pope, J. Piovia-Scott, R.N. Brown, and J.E. Foley. Treatment with Itraconazole Reduces Prevalence of Batrachochytrium dendrobatidis and Increases Overwinter Survival of Juvenile Cascades Frogs in the Wild. Diseases of Aquatic Organisms 112: 243-250
    • Hargrove, L., and J.T. Rotenberry. 2015. Elevational shifts in breeding bird distributions over a 26-year period in a southern California desert region. In T.L. Root, K.R. Hall, M. Herzog, and C. A. Howell (editors). Biodiversity in a Changing Climate: Linking Science and Management in Conservation. University of California Press, Oakland, CA.
    • Harmon, T.C., D. Dierick, N. Trahan, M.F. Allen, P Rundel, S. Oberbauer, L. Schwendenmann, and T.J. Zelikova. 2015. Low cost soil CO2 efflux and point concentration sensing systems for terrestrial ecology applications. Methods in Ecology and Evolution. Doi: 10.1111/2041-210X.12426. 5p.
    • Hernandez RR, Debenport SJ, Ndoye F, Ines E, Nkenmogne K, Thuita M, Leewis MC, Soumare, A, Gueye M, Miambi E, Lardi L, Diedhioiu I, and Dick RP (2015) The native shrub, Pilostigma reticulatum, as an ecological "resource island" for mango trees in the Sahel. Agriculture, Ecosystems, & Environment
    • Hernandez RR, Hoffacker MK*, Field CB (2015) Efficient use of land to meet sustainable energy needs. Nature Climate Change, doi:10.1038/NCLIMATE2556
    • Hernandez, R.R., M.K. Hoffacker, M.L. Murphy-Mariscal, G. Wu and M.F. Allen. 2015. Solar energy development impacts on land-cover change and protected areas. Proceedings of the National Academy of Sciences, USA. 112: 13579-14584. www.pnas.org/cgi/doi/10.1073/pnas.1517656112.
    • Hladun, K.R., D. R. Parker, and J. T. Trumble. 2015. Cadmium, copper and lead accumulation and bioconcentration in the vegetative and reproductive organs of Raphanus sativus: Implications for plant function and pollination. Journal of Chemical Ecology (in press)
    • Homyak P.M. , K.T. Vasquez†, J.O. Sickman, D.R. Parker, and J.P. Schimel. 2015. Improving nitrite analysis in soils: Drawbacks of the conventional 2 M KCl extraction. Soil Science Society of America Journal 79: 1237-1242
    • Hulton VanTassel, H.L., Barrows, C.W., and K.E. Anderson. 2015. Post-fire spatial heterogeneity alters ground-dwelling arthropod and small mammal community patterns in a landscape faced with a novel disturbance regime. Biological Conservation 182: 117-125.
    • Lee, M.-B., and J.T. Rotenberry. 2015. Effects of land use on riparian birds in a semi-arid region. Journal of Arid Environments 119:61-69. DOI: 10.1016/j.jaridenv.2015.04.001.
    • Liang LL, JR Eberwein, L Allsman, DA Grantz, and GD Jenerette. 2015. Regulation of CO2 and N2O fluxes by coupled carbon and nitrogen availability. Environmental Research Letters 034008.
    • Liu H, Xu Q, He P, Santiago LS, Yang K, Ye Q (2015) Divergent evolution of Magnoliaceae may explain phylogenetic niche conservatism in ecophysiological traits. Scientific Reports 5:12246
    • Lotus hosts delimit the mutualism-parasitism continuum of Bradyrhizobium Regus, J. U., K.A. Gano, Holllowell, A.C., V. Sofish, J. L. Sachs . 2015 Journal of Evolutionary Biology. 2015 In press
    • Maire V, Wright IJ, Prentice C, Batjes NH, Bhaskar R, Bodegom Pv, Cornwell WK, Ellsworth DS, Niinemets Ü, Ordoñez J, Reich PB, Santiago LS (2015) Global soil and climate effects on leaf photosynthetic traits and rates. Global Ecology and Biogeography 6:706-717
    • Murphy-Marisal, M.L., C.W. Barrows and M.F. Allen 2015. Native Wildlife Use Of Highway Underpasses In A Desert Environment. DOI: http://dx.doi.org/10.1894/0038-4909-60.4.340. Southwestern Naturalist 60: 340-348.
    • Murphy-Mariscal, M.L. Barrows, C.W., and Allen M.F. 1015. Native Carnivore use of Highway Underpasses in a Desert Environment. Southwester Naturalist 60:340-348
    • Native California soils are selective reservoirs for multidrug resistant bacteria Hollowell, A.C., K.A. Gano, G. Lopez, K. Shahin, J. U. Regus, N. Gleason, S. Greater, V. Pahua, J. L. Sachs . 2015 Environmental Microbiology Reports. In press
    • Oikawa PY, C Ge, J Wang, JR Eberwein, LL Liang, L Allsman, DA Grantz, and GD Jenerette. 2015. Unusually high soil nitrogen oxide emissions influence air quality in high temperature agricultural region. Nature Communications 6:8753 DOI: 10.1038/NCOMMS9753
    • Pasquini SC, Wright SJ, Santiago LS (2015) Lianas always outperform tree seedlings regardless of soil nutrients: results from a long-term fertilization experiment. Ecology 96:1866-1876
    • Pennington, M. J., N. G. Rivas, S. M. Prager, W. E. Walton, and J. T. Trumble. 2015. Pharmaceuticals and personal care products alter the holobiome and development of a medically important mosquito. Environmental Pollution 203:199-207.
    • Piovia-Scott, J., K. Pope, S.J. Worth, E.B. Rosenblum, T. Poorten, J. Refsnider, L.A. Rollins-Smith, L.K. Reinert, H.L. Wells, D. Rejmanek, S. Lawler, J.E. Foley. Correlates of virulence in a frog-killing fungal pathogen: evidence from a California amphibian decline. In press, The ISME Journal
    • Pivovaroff AL, Pasquini SC, De Guzman ME, Alstad KP, Stemke J, Santiago LS (2015) Multiple strategies for drought survival among woody plant species at a desert-chaparral ecotone. Functional Ecology DOI: 10.1111/1365-2435.12518
    • Reznick, D. N. Integrating wild populations with laboratory experiments. Lab Animal 44: 283-283.
    • Riordan EC, TW Gillespie, L Pitcher, S Pincetl, GD Jenerette, and DE Pataki. 2015. Threats of future climate change and land use to vulnerable tree species native to Southern California. Environmental Conservation 2:127-138
    • Rueda-Cediel*, P., K.A. Anderson, T.J. Regan, J. Franklin, and H.M. Regan. Combined influences of model choice, data quality, and data quantity when estimating population trends. PLoS ONE (DOI: 10.1371/journal.pone.0132255)
    • Rueda-Cediel, P., Anderson, K.E., Regan, H.M., Regan, T.J., and J. Franklin. 2015. Tradeoffs between model choice, data quality and quantity when estimating population trends and extinction risk. PLoS ONE 10: e0132255.
    • Santiago LS (2015) Nutrient limitation of eco-physiological processes in tropical trees. Trees-Structure and Function 29:1291-1300
    • Santiago LS, Pasquini SC, De Guzman ME (2015) Physiological implications of the liana growth form. In: Schnitzer SA, Bongers F, Burnham R, Putz FE (eds) Ecology of Lianas. John Wiley & Sons, Oxford, UK, pp 288-298
    • Sarhad, J., and K.E. Anderson. 2015. Modeling population persistence in continuous aquatic networks using metric graphs. Fundamental and Applied Limnology 186: 135-152.
    • Sarukhán, J., T. Urquiza-Haas, P. Koleff, J. Carabias, R. Dirzo, E. Ezcurra, S. Cerdeira-Estrada, and J. Soberón. 2015. Strategic Actions to Value, Conserve, and Restore the Natural Capital of Megadiversity Countries: The Case of Mexico. BioScience (first published online December 17, 2014 doi:10.1093/biosci/biu195)
    • Serra-Diaz, J.M., Franklin, J., Sweet, L.C., McCullough, I.M., Syphard, A.D, Regan, H.M, Flint, L.E., Flint, A.L, Dingman, J.R., Moritz, M., Redmon, K., Hannah, L., Davis. F.W. (accepted). Averaged 30 year climate change projections mask opportunities for species establishment. Ecography
    • Shrestha, P., A. Ibanez, S. Bauer, S.I. Glassman, T.M. Szaro, T.D. Bruns, and J.W. Taylor. 2015. Fungi isolated from Miscanthus and sugarcane: Biomass conversion, fungal enzymes and hydrolysis of plant cell wall polymers. Biotechnology for Biofuels 8(1):38.
    • SOLAR POWR: UCR Study touts small local projects (please open link in Internet Explorer or Chrome, does not work in Firefox), http://www.pe.com/articles/solar-787409-projects-study.html
    • Swab, R.M.*, H.M. Regan, D. Matthies, U. Becker and H.H. Bruun. The role of demography, intra-species variation, and species distribution models in species’ projections under climate change. Ecography 38: 221-230, 2015
    • Travis, J., D. N. Reznick, R. D. Bassar, A. Lopez-Sepulcre, R. Ferriere and T. Coulson. Do eco-evo feedbacks help us understand nature? Answers from studies of the Trinidadian guppy. Advances in Ecological Research 50: 1-40.
    • Valliere, J.M. and E.B. Allen. 2016. Interactive effects of nitrogen deposition and drought-stress on plant-soil feedbacks of Artemisia californica seedlings. Plant and Soil in press.
    • Vandergast , A.G., Wood, D.A., Thompson, A.R., Fisher, M., Barrows, C.W., Grant, T.J. 2015. Drifting to oblivion? Rapid genetic differentiation in an endangered lizard following habitat fragmentation and drought. Diversity and Distributions: (2015) 1-14.
    • Xie JB, GQ Xu, GD Jenerette, YF Bai, ZY Wang, and Y Li. 2015. Apparent plasticity in functional traits determining competitive ability and spatial distribution: a case from the desert. Scientific Reports 5:12174
    • Zandona, E., S. K. Auer, S. S. Kilham and D. N. Reznick. Contrasting population and diet influences on gut length of an omnivorous tropical fish, the Trinidadian guppy (Poecilia reticulata. Plos 1: DOI:10.1371/journal.pone.0136079.
    • Zhichun L, GD Jenerette, SX Zhan, WH Li, SX Zheng, and YF Bai. 2015. Testing the scaling effects and mechanisms of N-induced biodiversity loss: Evidence from a decade-long grassland experiment. Journal of Ecology 103:750-760
  • 2014
    • Allen MF, Kitajima, K, Hernandez, RR (2014) Mycorrhizae and Global Change, In: Trees in a Changing Environment (Eds. Tausz M, Grulke, N) Springer Netherlands, pp 37-59
    • Allen, M.F. and K. Kitajima. 2013. In situ high frequency observations of mycorrhizas. New Phytologist 200: 222-228. doi: 10.1111/nph.12363. 7 pages.
    • Allen, M.F. and K. Kitajima. 2014. Net primary production of ectomycorrhizas in a California forest. Fungal Ecology 10: 81-90. http://dx.doi.org/10.1016/j.funeco.2014.01.007.
    • Allen, M.F., K. Kitajima, R.R. Hernandez. 2014. Mycorrhizae and global change. Pp. 37-59: in M. Tausz, N.E. Grulke (eds). Trees in a changing environment. Springer- Plant Sciences, Dordrecht, The Netherlands
    • Allen, Michael F. Cameron W. Barrows, Michael D. Bell, G. Darrel Jenerette, Robert F. Johnson, and Edith B. Allen 2014 Threats to California’s desert ecosystems. Fremontia, 42(2), 3-8
    • Barrows, C.W., J. Hoines, K.D. Fleming, M.S. Vamstad, M.L. Murphy-Mariscal, K. Lalumiere, and M. Harding. 2014. Designing a monitoring framework to assess the impacts of climate change for Joshua Tree National Park. Biodiversity and Conservation. DOI: 10.1007/s10531-014-0779-2
    • Beltrán*, B. J., J. Franklin, A. D. Syphard, H. M. Regan, L. E. Flint, A. L. Flint. Effects of Climate Change and Urban Development on the Distribution and Conservation of Vegetation in a Mediterranean Type Ecosystem. International Journal of Geographical Information Science 8(28):1561-1589, 2014
    • Bledsoe, C. S., M. F. Allen, and D. Southworth. 2014. Beyond Mutualism: Complex Mycorrhizal Interactions. Pages 311–334 in U. Luttge, W. Beyschlag, and J. Cushman, editors. Progress in Botany 75. Springer-Verlag Berlin, Berlin.
    • Bonebrake, T.C., A.D. Syphard, J. Franklin, K.E. Anderson, H.R. Akçakaya, T. Mizerek*, C. Winchell, and H.M. Regan. Fire Management, Managed Relocation and Land Conservation Options for Long-Lived Obligate Seeding Plants under Global Changes in Climate, Urbanization and Fire Regime. Conservation Biology 28(4):1057-1067, 2014
    • Burger JC, Ellstrand NC. 2014. Rapid evolutionary divergence of an invasive weed from its crop ancestor and evidence for local diversification. Journal of Systematics and Evolution 52:750-764
    • Burgman, M.A. and H.M. Regan. Information-gap decision theory fills a gap in ecological applications. Ecological Applications 24(1): 227–228, 2014
    • Burgman, M.A., H.M. Regan, L.A. Maguire, M. Colyvan, J. Justus, T. Martin and K. Rothley. Voting systems for environmental decisions: a review. Conservation Biology 28(2): 322-332, 2014
    • Clarke LW, L Li, GD Jenerette, and Z Yu. 2014. Plant biodiversity and ecosystem service production in home gardens across the Beijing Municipality of China. Urban Ecosystems 17:741-760
    • Cox, Robert D., Kristine L. Preston, Robert F. Johnson, Richard A. Minnich, Edith B. Allen 2014 Influence of landscape-scale variables on vegetation conversion to exotic annual grassland in southern California, USA. Global Ecology and Conservation Global Ecology and Conservation, 2, 190-203
    • De La Riva, D. G., B. G. Vindiola, T. N. Castañeda, D. R. Parker and J. T. Trumble. 2014. Impact of selenium on mortality, bioaccumulation and feeding deterrence in the invasive Argentine ant, Linepithema humile (Hymenoptera: Formicidae). Science of the Total Environment 481: 446-452
    • Droser, M.L., G.G. Gehling, M.E. Dzaugis, M.J. Kennedy, D. Rice, and M.F. Allen. 2014. A new Ediacaran fossil with a novel sediment displacive life habit. Journal of Paleontology 88: 145-151.
    • Egerton-Warburton L.M., Querejeta J.I., Allen M.F. and Finkelman S.L . 2013. Mycorrhizal Fungi, Reference Module in Earth Systems and Environmental Sciences, Elsevier. 27-Sep-13 doi: 10.1016/B978-0-12-409548-9.05226-X.
    • Ehinger M, Mohr TJ, Starcevich JB, Sachs JL, Porter SS & Simms EL (2014) Specialization-generalization trade-off in a Bradyrhizobium symbiosis with wild legume hosts, BMC Ecology, 14:8
    • Ellstrand NC, Heredia SM. 2014. Novel seed protection in the recently evolved invasive, California wild radish. American Journal of Botany. 101: 2043-2051
    • Ellstrand NC. 2014. Is gene flow the most important evolutionary force in plants? American Journal of Botany 101:1-17
    • Estrada-Medina, H., L.S. Santiago, R.C. Graham, M.F. Allen, J.J. Jiménez-Osornio. 2013. Source water, phenology and growth of two tropical dry forest tree species growing on shallow karst soils. Trees 27: 1297-1307. DOI 10.1007/s00468-013-0878-9
    • Estrada-Medina, H., R.C. Graham, M.F. Allen, J.J. Jiménez-Osornio, and S. Robles-Casolco. 2013. The importance of limestone bedrock and dissolution karst features on tree root distribution in northern Yucatán, México. Plant and Soil 362:37-50. DOI 10.1007/s11104-012-1175-x
    • Evans JR, Santiago LS (2014) PrometheusWiki Gold Leaf Protocol: gas exchange using LI-COR 6400. Functional Plant Biology 41:223-226
    • Franklin, J. H.M. Regan, A.D. Syphard. Linking spatially explicit species distribution and population models to plan for the persistence of species under global change. Environmental Conservation 41(2):97-109, 2014
    • Friesen ML, von Wettberg EJB, Badri M, Moriuchi KS, Barhoumi F, Cuellar-Ortiz S, Chang PL, Cordeiro MA, Vu WT, Arraouadi S, Djébali N, Zribi K, Badri Y, Porter SS, Aouani ME, Cook DR, Strauss SY, &. Nuzhdin SV (2014) The Ecological and Genomic Basis of Salinity Adaptation in Tunisian Medicago truncatula, BMC Genomics, 15(1):1160
    • Garland, T., Jr. 2014. Locomotion. 129-136 in A. M. Castilla, D.J. Al-Kubaisi, C. Davies, A. Mushtak, W.J. Al-Marri, S. Al-Naimi, E.A. Al-Obaidli, A. Valdeón, E.O.H. Saifelnasr, M. Al-Yafei, A.J. Alkuwari, and A. A. M. Al-Hemaidi. The lizards living in Qatar. Ministry of Environment (Qatar), Doha, Qatar.
    • Hargrove, L., and J.T. Rotenberry. In press. Elevational shifts in breeding bird distributions over a 26-year period in a southern California desert region. In T.L. Root, K.R. Hall, M. Herzog, and C. A. Howell (editors). Biological Impacts of Climate Change in California: Case Studies Linking Science and Management. University of California Press, Oakland, CA
    • Hernandez RR, Hoffacker MK*, Murphy-Mariscal M, Wu G, Allen MF (2014, in review) Solar energy development impacts on terrestrial ecosystems
    • Hernandez, R. R., S. B. Easter, M. L. Murphy-Mariscal, F. T. Maestre, M. Tavassoli, E. B. Allen, C. W. Barrows, J. Belnap, R. Ochoa-Hueso, S. Ravi, and M. F. Allen. 2014. Environmental impacts of utility-scale solar energy. Renewable & Sustainable Energy Reviews 29:766–779.
    • Hernandez RR, Hoffacker M*, Field CB (2014) The Land-Use Efficiency of Big Solar. Environmental Science and Technology, doi: 10.1021/es4043726
    • Hernandez, R. R., S. B. Easter, M. L. Murphy-Mariscal, F. T. Maestre, M. Tavassoli, E. B. Allen, C. W. Barrows, J. Belnap, R. Ochoa-Hueso, S. Ravi, and M. F. Allen. 2014. Environmental impacts of utility-scale solar energy. Renewable & Sustainable Energy Reviews 29:766–779
    • Hernandez, R.R. and M.F. Allen. 2013. Diurnal patterns of productivity of arbuscular mycorrhizal fungi revealed with the soil ecosystem observatory. New Phytologist 200: 547-557. Doi:10.1111/nph.12393
    • Hernandez, R.R., S.B. Easter, M.L. Murphy-Mariscal, F.T. Maestre, M. Tavassoli, E.B. Allen, C.W. Barrows, J. Belnap, R. Ochoa-Hueso, S. Ravi, and M.F. Allen. 2014. Environmental impacts of utility-scale solar energy. Renewable and Sustainable Energy Reviews 29: 766-779.
    • Hernandez, R.R., S.B. Easter, M.L. Murphy-Mariscal, F.T. Maestre, M. Tavassoli, E.B. Allen, C.W. Barrows, J. Belnap, R. Ochoa-Hueso, S. Ravi, and M.F. Allen. 2014. Environmental impacts of utility-scale solar energy. Renewable and Sustainable Energy Reviews. 29:766-779
    • Homyak P.M. and J.O. Sickman.  2014. Influence of soil moisture on the seasonality of nitric oxide emissions from chaparral soils, Sierra Nevada, California, USA. Journal of Arid Environments 103: 46-52
    • Homyak P.M., J.O. Sickman, A.E. Miller, J.M. Melack, and J.P. Schimel.  2014. Assessing N saturation in a seasonally dry chaparral watershed: Limitations of traditional indicators of N saturation. Ecosystems 17: 1286-1305 * Awarded the Elizabeth Sulzman Award (honorable mention) of the Ecological Society of America Biogeosciences section
    • Homyak P.M., J.O. Sickman, and J.M. Melack. 2014. Phosphorus in sediments of high-elevation lakes in the Sierra Nevada (California): Implications for internal phosphorus loading. Aquatic Sciences 76: 511-525
    • Homyak P.M., J.O. Sickman, and J.M. Melack. 2014. Pools, transformations, and sources of P in high-elevation soils: Implications for nutrient transfer to Sierra Nevada lakes. Geoderma 217-218: 65-73
    • Kitajima, K., M.F. Allen and M.L. Goulden. 2013. Contribution of Hydraulically Lifted Deep Moisture to the Water Budget in a Southern California Mixed Forest. Journal of Geophysical Research- Biogeosciences 118: 1561-1572
    • Knick, S.T., M. Leu, J.T. Rotenberry, S.E. Hanser, and K.A. Fesenmyer. 2014. Diffuse migratory connectivity in two species of shrubland birds: Evidence from stable isotopes. Oecologica 174:595-608. DOI 10.1007/s00442-013-2791-8
    • Lu BR, Ellstrand NC. 2014. World food security and the tribe Triticeae (Poaceae): Genetic resources of cultivated, wild, and weedy taxa for crop improvement. Journal of Systematics and Evolution 52:661-666
    • Martínez-Berdeja, A., M. Torres, D. L. Altshuler, and E. Ezcurra. 2014. Hydration history and attachment morphology regulate seed release in Chorizanthe rigida (Polygonaceae), a serotinous desert annual. American Journal of Botany 101(7): 1079–1084. doi 10.3732/ajb. 1400120
    • Peters, E.M., S. Arizaga, C. Martorell, R. Zaragoza, and E. Ezcurra. 2014. Distribución geográfica y estado de conservación de las poblaciones de Mammillaria pectinifera. Revista Mexicana de Biodiversidad 85: 942-952, DOI: 10.7550/rmb.36338
    • Pietrasiak N, Drenovsky RE, Santiago LS, Graham RC (2014) Biogeomorphology of a Mojave Desert landscape - Configurations and feedbacks of abiotic and biotic land surfaces during landform evolution. Geomorphology 206:23-36
    • Pivovaroff AL, Sack L, Santiago LS (2014) Coordination of stem and leaf hydraulic conductance in southern California shrubs: A test of the hydraulic segmentation hypothesis. New Phytologist 203:842:850
    • Porter SS & Simms EL (2014) Selection for cheating across disparate environments in the legume-rhizobium mutualism, Ecology Letters, 17:1121-1129
    • Pouzoulet J, Pivovaroff AL, Santiago LS, Rolshausen PE (2014) Can vessel dimension explain tolerance toward fungal vascular wilt diseases in woody plants? Lessons from Dutch elm disease and esca disease in grapevine. Frontiers in Plant Science 5:article 253
    • Price, Mary V., Daniel T. Blumstein, and Evelyn H. Strombom.(2014) Human activity affects the perception of risk by mule deer. Current Zoology 60(6):693-699
    • Rao, Leela E., John R. Matchett, Matthew L. Brooks, Robert F. Johnson, Richard A. Minnich, Edith B. Allen 2014 Relationships between annual plant productivity, nitrogen deposition and fire size in low elevation California desert scrub. International Journal of Wildland Fire, 24(1), 48-58
    • Rubio-Cisneros, N.T., O. Aburto-Oropeza, J. Murray, C.E. González-Abraham, J. Jackson, and E. Ezcurra. 2014. Transnational Ecosystem Services: The potential of habitat conservation for waterfowl through recreational hunting activities. Human Dimensions of Wildlife 19:1–16. doi: 10.1080/10871209.2013.819536
    • Rudgers, J.A., S. N. Kivlin, K. D. Whitney, M. V. Price, N. M. Waser, J. Harte. (20140) Responses of high-altitude graminoids and soil fungi to 20 years of experimental warming. Ecology 95(7):1918-1928. doi: 10.1890/13-1454.1
    • Santiago LS, Dawson TE (2014) Light-use efficiency of California redwood forest understory plants along a moisture gradient. Oecologia 174:351-363
    • Schreeg LA, Santiago LS, Wright SJ, Turner BL (2014) Stem, root and older leaf N:P ratios are more responsive indicators of soil nutrient availability than new foliage. Ecology 95:2062-2068
    • Scott RL, TE Huxman, GA Barron-Gafford, GD Jenerette, JM Cable, and EP Hamerlynck. 2014. When vegetation alters ecosystem water availability. Global Change Biology 20:2198-2210
    • Serra-Diaz J.M., J. Franklin, M. Ninyerola, F.W. Davis, A.D. Syphard, H.M. Regan, M. Ikegami. Species’ exposure to climate change in time and space: from climate velocity to bioclimatic-velocity. Diversity and Distributions. 20:169-180, 2014
    • Shen Y, Santiago LS, Shen H, Ma L, Lian JY, Cao HL, Lu HP, Ye WH (2014) Determinants of subtropical tree diameter growth change with ontogenetic stage. Oecologia 175:1315-1324
    • Specialization-generalization trade-off in a Bradyrhizobium symbiosis with wild legume hosts Ehinger, M., Mohr, T. J., Starcevich, J. B., Sachs, J. L., Porter, S. S., Simms, E. L. 2014 BMC Ecology. 14:8
    • Stripe CM, Santiago LS, Padgett P (2014) Contrasting physiological responses of ozone- tolerant Phaseolus vulgaris and Nicotiana tobaccum varieties to ozone and nitric acid. Environmental Science Processes & Impacts 16:2488-2495
    • Talbot, J.M., T.D. Bruns, J.W. Taylor, D.P. Smith, S. Branco, S.I. Glassman, S. Erlandson,R. Vilgalys, H.L. Liao, M.E. Smith, and K.G. Peay. 2014. Endemism and functional convergence across the North American soil mycobiome. Proceedings of the National Academy of Sciences 111(17): 6341-6346.
    • Vanderplank, S., E. Ezcurra, J. Delgadillo, R. Felger, and L.A. McDade. 2014. Conservation challenges in a threatened hotspot: Agriculture and plant biodiversity losses in Baja California, Mexico. Biodiversity and Conservation 23(9): 2173-2182 DOI 10.1007/s10531-014-0711-9
    • Vanderplank, S.E., S. Mata, and E. Ezcurra. 2014. Biodiversity and archeological conservation connected: Aragonite shell middens increase plant diversity. Bioscience 64(3): 202–209. doi: 10.1093/biosci/bit038
    • Velarde, E., B.T. Wilder, R.S. Felger, and E. Ezcurra. 2014. Floristic diversity and dynamics of Isla Rasa, Gulf of California - A globally important seabird island. Botanical Sciences 92(1): 89–101
    • Velarde, E., E. Ezcurra, and D.W. Anderson. (in press, corrected proof available). Seabird diet predicts following-season commercial catch of Gulf of California Pacific Sardine and Northern Anchovy. Journal of Marine Systems (available online 23 August 2014)
    • Waser, N. M., M. V. Price, D. T. Blumstein, S. R. Arozqueta , B. D. Castro-Escobar, R. Pickens, and A. Pistoia. (2014) Coyotes, deer, and wildflowers: Diverse evidence points to a trophic cascade Naturwissenschaften 101:427-436. DOI 10.1007/s00114-014-1172-4
    • Wilder, B.T., J.L. Betancourt, C.W. Epps, R.S. Crowhurst, J.I. Mead, and E. Ezcurra. 2014. Local extinction and unintentional rewilding of bighorn sheep (Ovis canadensis) on a desert island. PLoS-ONE 9(3): e91358. doi: 10.1371/journal.pone.0091358
  • 2013
    • Allen, M. F., G. D. Jenerette, L. S. Santiago. 2013. Carbon Balance in California Deserts: Impacts of Widespread Solar Power Generation. California Energy Commission. Publication number: CEC-500-2013-063.
    • Allen, M.F. and K. Kitajima. 2013. In situ high frequency observations of mycorrhizas. New Phytologist 200: 222-228. doi: 10.1111/nph.12363. 7 pages.
    • Barrows, C. W., H. Gadsden, M. Fisher, C. Garcia-De la Pena, G. Castaneda, and H. Lopez-Corrujedo. 2013. Patterns of lizard species richness within National Parks and Biosphere Reserves across North America’s deserts. Journal of Arid Environments 95:41–48.
    • Clow, D. W., H. Forrester, B. Miller, H. Roop, J. O. Sickman, H. Ryu, and J. S. Domingo. 2013. Effects of Stock Use and Backpackers on Water Quality in Wilderness in Sequoia and Kings Canyon National Parks, USA. Environmental Management 52:1400–1414.
    • Dickens, S. J. M., E. B. Allen, L. S. Santiago, and D. Crowley. 2013. Exotic annuals reduce soil heterogeneity in coastal sage scrub soil chemical and biological characteristics. Soil Biology & Biochemistry 58:70–81.
    • Egerton-Warburton L.M., Querejeta J.I., Allen M.F. and Finkelman S.L . 2013. Mycorrhizal Fungi, Reference Module in Earth Systems and Environmental Sciences, Elsevier. 27-Sep-13 doi: 10.1016/B978-0-12-409548-9.05226-X.
    • Ellstrand NC, Meirmans P, Rong J, Bartsch D, Ghosh A, de Jong T, Haccou P, Lu BR, Snow AA, Stewart Jr. CN, Strasburg JL, van Tienderen PH, Vrieling K, Hooftman D. 2013. Introgression of crop alleles into wild or weedy populations. Annual Review of Ecology, Evolution, and Systematics 44: 325-346.
    • Estrada-Medina, H., L.S. Santiago, R.C. Graham, M.F. Allen, J.J. Jiménez-Osornio. 2013. Source water, phenology and growth of two tropical dry forest tree species growing on shallow karst soils. Trees 27: 1297-1307. DOI 10.1007/s00468-013-0878-9
    • Estrada-Medina, H., R.C. Graham, M.F. Allen, J.J. Jiménez-Osornio, and S. Robles-Casolco. 2013. The importance of limestone bedrock and dissolution karst features on tree root distribution in northern Yucatán, México. Plant and Soil 362:37-50. DOI 10.1007/s11104-012-1175-x
    • Garcia-Verdugo, C., E. Friar, and L. S. Santiago. 2013. Ecological Role of Hybridization in Adaptive Radiations: A Case Study in the Dubautia Arborea-Dubautia Ciliolata (asteraceae) Complex. International Journal of Plant Sciences 174:749–759.
    • Hernandez, R.R. and M.F. Allen. 2013. Diurnal patterns of productivity of arbuscular mycorrhizal fungi revealed with the soil ecosystem observatory. New Phytologist 200: 547-557. Doi:10.1111/nph.12393
    • Hladun, K. R., D. R. Parker, K. D. Tran, and J. T. Trumble. 2013. Effects of selenium accumulation on phytotoxicity, herbivory, and pollination ecology in radish (Raphanus sativus L.). Environmental Pollution 172: 70-75
    • Hladun, K.R., O. Kaftanoglu, D. Parker, K. Tran, and J. T. Trumble. 2013. Effects of selenium on development, survival and accumulation in the honey bee (Aphis mellifera L.). Environmental Toxicology and Chemistry 32: 2584-2592
    • Holt JS, Welles SR, Silvera K, Heap IM, Heredia SM, Martinez-Berdeja A, Palenscar KT, Sweet LC, Ellstrand NC. 2013. Taxonomic and life history bias in herbicide resistant weeds: implications for deployment of resistant crops. PLoS ONE 8(9): e71916.
    • Hufford MB, Lubinsky P, Pyhäjärvi T, Devengenzo MT, Ellstrand NC, Ross-Ibarra J. 2013. The genomic signature of crop-wild introgression in maize. PLoS Genetics 9(5): e1003477
    • Kitajima, K., M.F. Allen and M.L. Goulden. 2013. Contribution of Hydraulically Lifted Deep Moisture to the Water Budget in a Southern California Mixed Forest. Journal of Geophysical Research- Biogeosciences 118: 1561-1572
    • Leak-Garcia, J., J. S. Holt, S.-C. Kim, L. Mu, J. A. Mejias, and N. C. Ellstrand. 2013a. More than multiple introductions: Multiple taxa contribute to the genesis of the invasive California’s wild artichoke thistle. Journal of Systematics and Evolution 51:295–307.
    • Leak-Garcia, J., J. S. Holt, S.-C. Kim, L. Mu, J. A. Mejias, and N. C. Ellstrand. 2013b. More than multiple introductions: Multiple taxa contribute to the genesis of the invasive California’s wild artichoke thistle (vol 51, pg 295, 2013). Journal of Systematics and Evolution 51:639–639.
    • Mogren, C. L., S. Webb, W.E. Walton and J.T. Trumble. 2013. Micro x-ray absorption spectroscopic analysis of arsenic localization and biotransformation in Chironomus riparius Meigen (Diptera: Chironomidae) and Culex tarsalis Coquillett (Culicidae). Environmental Pollution 180: 78-83
    • Mogren, C.L., W. E. Walton, D. Parker, and J. T. Trumble. 2013. Trophic transfer as a route of arsenic movement from aquatic to terrestrial environments. PLOS ONE 8(6) e67817. doi:10.1371/journal.pone.0067817
    • Mogren, C.L., W.E. Walton, and J.T, Trumble. 2013. Tolerance to individual and joint effects of arsenic and Bacillus thuringiensis subsp. israelensis or Lysinibacillus sphaericus in Culex mosquitoes. Insect Science. DOI: 10.1111/1744-7917.12046
    • Molina-Martinez, A., J. Leonel Leon-Cortes, and H. M. Regan. 2013. Climatic and geometric constraints as driving factors of butterfly species richness along a Neotropical elevational gradient. Journal of Insect Conservation 17:1169–1180.
    • Pietrasiak, N., J. U. Regus, J. R. Johansen, D. Lam, J. L. Sachs, and L. S. Santiago. 2013. Biological soil crust community types differ in key ecological functions. Soil Biology & Biochemistry 65:168–171.
    • Prentice, T. R., and R. A. Redak. 2013. A new species of the spider genus Eridantes Crosby & Bishop from the southwestern United States and mainland Mexico with a revised diagnosis of the genus (Araneae, Linyphiidae, Erigoninae). Zootaxa 3616:357–366.
    • Robinson, M. D., and C. W. Barrows. 2013. Namibian and North American sand-diving lizards. Journal of Arid Environments 93:116–125.
    • Santiago, L. S., and S. M. Furiam Dias. 2013. Matrix of sustainability indicatorsfor the urban solid waste management. Engenharia Sanitaria E Ambiental 17:203–212.
    • Shen, Y., L. S. Santiago, L. Ma, G.-J. Lin, J.-Y. Lian, H.-L. Cao, and W.-H. Ye. 2013. Forest dynamics of a subtropical monsoon forest in Dinghushan, China: recruitment, mortality and the pace of community change. Journal of Tropical Ecology 29:131–145.
    • Sickman, J. O., D. M. Bennett, D. M. Lucero, T. J. Whitmore, and W. F. Kenney. 2013. Diatom-inference models for acid neutralizing capacity and nitrate based on 41 calibration lakes in the Sierra Nevada, California, USA. Journal of Paleolimnology 50:159–174.
    • Syphard, A. D., H. M. Regan, J. Franklin, R. M. Swab, and T. C. Bonebrake. 2013. Does functional type vulnerability to multiple threats depend on spatial context in Mediterranean-climate regions? Diversity and Distributions 19:1263–1274.
    • Talbot, J.M., T.D. Bruns, D.P. Smith, S. Branco, S.I. Glassman, S. Erlandson, R. Vilgalys, and K.G. Peay. 2013. Independent roles of ectomycorrhizal and saprotrophic communities in soil organic matter decomposition. Soil Biology and Biochemistry 57: 282-291.
    • Waser, N. M., M. V. Price, and J. R. Mbwambo. 2013 Removing other tree species does not benefit the timber species Cephalosphaera usambarensis. Tanzania Journal of Forestry and Nature Conservation 82:42-47
  • 2012
    • Albertin, A. R., J. O. Sickman, A. Pinowska, and R. J. Stevenson. 2012. Identification of nitrogen sources and transformations within karst springs using isotope tracers of nitrogen. Biogeochemistry 108:219–232.
    • Barrows, C. W. 2012. Temporal Patterns of Abundance of Arthropods on Sand Dunes. Southwestern Naturalist 57:262–266.
    • Barrows, C.W. and M.L. Murphy-Mariscal. 2012. Modeling impacts of climate change on Joshua trees at their southern boundary: How scale impacts predictions. Journal of Biological Conservation. 152: 29-36.
    • Chavez NB, Flores JJ, Martin J, Ellstrand NC, Guadagnuolo R, Heredia S, Welles S. 2012. Maize x teosinte hybrid cobs do not prevent crop gene introgression. 2012. Economic Botany 66:132-137.
    • Conlisk, E., D. Lawson, A. D. Syphard, J. Franklin, L. Flint, A. Flint, and H. M. Regan. 2012. The Roles of Dispersal, Fecundity, and Predation in the Population Persistence of an Oak (Quercus engelmannii) under Global Change. Plos One 7:e36391.
    • Dempewolf H, Hodgins KA, Rummell SE, Ellstrand NC, Rieseberg LH. 2012. Reproductive isolation during domestication. The Plant Cell 24 7:2710-2717.
    • Ellstrand NC. 2012. Over a decade of crop transgenes out-of-place. In Regulation of Agricultural Biotechnology: the United States and Canada. ed CA Wozniak, A McHughen, pp. 123-135.
    • Estrada-Medina, H., R.C. Graham, M.F. Allen, J.J. Jiménez-Osornio, and S. Robles-Casolco. 2012 In press. The importance of limestone bedrock and dissolution karst features on tree root distribution in northern Yucatán, México. Plant and Soil DOI 10.1007/s11104- 012-1175-x
    • Glassman, S.I. and B.B. Casper. 2012. Biotic contexts alter metal sequestration and AMF effects on plant growth in soils polluted with heavy metals. Ecology 93(7): 1550-1559.
    • Hernandez, R.R., M.S. Mayernik, M.L. Murphy-Mariscal, and M.F. Allen. 2012. Advanced technologies and data management practices in environmental science: Lessons from Academia. BioScience 62: 1067-1076. DOI: 10.1525/bio.2012.62.12.8
    • Holt, J. S. 2012. Landscapes and townscapes of North Craven: insights from the archives. Agricultural History Review 60:136–136.
    • Ignacio Querejeta, J., L. M. Egerton-Warburton, I. Prieto, R. Vargas, and M. F. Allen. 2012. Changes in soil hyphal abundance and viability can alter the patterns of hydraulic redistribution by plant roots. Plant and Soil 355:63–73.
    • Iverson, C.M., M.T. Murphy, M.F. Allen, J. Childs, D.M. Eissenstadt, E.A. Lilleskov, T.M. Sarjala, V.L. Sloan and P.E. Sullivan. 2012. Advancing the use of minirhizotrons in wetlands. Plant and Soil 352: 23-39. DOI: 10.1007/s11104-011-0953-1
    • Jepsen, S. M., N. P. Molotch, M. W. Williams, K. E. Rittger, and J. O. Sickman. 2012a. Interannual variability of snowmelt in the Sierra Nevada and Rocky Mountains, United States: Examples from two alpine watersheds. Water Resources Research 48:W02529.
    • Jepsen, S. M., N. P. Molotch, M. W. Williams, K. E. Rittger, and J. O. Sickman. 2012b. Interannual variability of snowmelt in the Sierra Nevada and Rocky Mountains, United States: Examples from two alpine watersheds (vol 48, W02529, 2012). Water Resources Research 48:W05901.
    • Ladwig, L.M., S.L. Collins, A.L. Swann, Y. Xia, M.F. Allen and E.B. Allen. 2012. Above- and belowground responses to nitrogen addition in a Chihuahuan desert grassland. Oecologia 169: 177-185. DOI: 10.1007/s00442-011-2173-z
    • Latif, Q. S., K. D. Fleming, C. Barrows, and J. T. Rotenberry. 2012. Modeling seasonal detection patterns for burrowing owl surveys. Wildlife Society Bulletin 36:155–160. .
    • Lawson, D. M., H. M. Regan, P. H. Zedler, and J. Franklin. 2012. Cumulative effects of land use, altered fire regime and climate change on persistence of Ceanothus verrucosus, a rare, fire-dependent plant species (vol 16, pg 25187, 2010). Global Change Biology 18:2980–2980.
    • Leak-Garcia JA, Holt JS, Kim S-C, Mu L, Mejías JA, Ellstrand NC. 2012. More than multiple introductions: Multiple taxa contribute to the genesis of the invasive California's wild artichoke thistle. Journal of Systematics and Evolution 51: 295-307.
    • Martinez-Abrain, A., G. Tavecchia, H. M. Regan, J. Jimenez, M. Surroca, and D. Oro. 2012. Effects of wind farms and food scarcity on a large scavenging bird species following an epidemic of bovine spongiform encephalopathy. Journal of Applied Ecology 49:109–117.
    • Marushia, R. G., M. L. Brooks, and J. S. Holt. 2012. Phenology, Growth, and Fecundity as Determinants of Distribution in Closely Related Nonnative Taxa. Invasive Plant Science and Management 5:217–229.
    • Pasquini, S. C., and L. S. Santiago. 2012. Nutrients limit photosynthesis in seedlings of a lowland tropical forest tree species. Oecologia 168:311–319.
    • Prentice, T. R., and R. A. Redak. 2012. Esophyllas, a new genus of erigonine spiders from southern California (Araneae: Linyphiidae: Erigoninae). Zootaxa:1–21.
    • Preston, K.L., R.A. Redak, M.F. Allen and J.T. Rotenberry. 2012. Changing Distribution Patterns of the Endangered Quino Checkerspot: Linking Local Extinction Patterns and Variable Habitat Relationships. Biological Conservation 152: 280-290. DOI: 10.1016/j.biocon.2012.03.011
    • Querejeta, J.I., L.M. Egerton-Warburton, I. Prieto, R. Vargas, and M.F. Allen. 2012. Changes in soil hyphal abundance and viability can alter the patterns of hydraulic redistribution by plant roots. Plant and Soil 355: 63-73. DOI: 10.1007/s11104-011-1080-8
    • Regan, H. M., A. D. Syphard, J. Franklin, R. M. Swab, L. Markovchick, A. L. Flint, L. E. Flint, and P. H. Zedler. 2012. Evaluation of assisted colonization strategies under global change for a rare, fire-dependent plant. Global Change Biology 18:936–947.
    • Santiago, L. S., S. J. Wright, K. E. Harms, J. B. Yavitt, C. Korine, M. N. Garcia, and B. L. Turner. 2012. Tropical tree seedling growth responses to nitrogen, phosphorus and potassium addition. Journal of Ecology 100:309–316.
    • Swab, R. M., H. M. Regan, D. A. Keith, T. J. Regan, and M. K. J. Ooi. 2012. Niche models tell half the story: spatial context and life-history traits influence species responses to global change. Journal of Biogeography 39:1266–1277.
    • Talbot, J.M., T.D. Bruns, D.P. Smith, S. Branco, S.I. Glassman, S. Erlandson, R. Vilgalys, and K.G. Peay. 2012. Independent roles of ectomycorrhizal and saprotrophic communities in soil organic matter decomposition. Soil Biology and Biochemistry 57(2013): 282-291.
    • Waterworth, R. A., R. A. Redak, and J. G. Millar. 2012. Probable Site of Sex Pheromone Emission in Female Vine and Obscure Mealybugs (Hemiptera: Pseudococcidae). Journal of Insect Behavior 25:287–296.
    • Wollwage, L., S. Fedick, S. Sedov, and E. Solleiro-Rebolledo. 2012. The Deposition and Chronology of Cenote T’isil: A Multiproxy Study of Human/Environment Interaction in the Northern Maya Lowlands of Southeast Mexico. Geoarchaeology-an International Journal 27:441–456.
    • Zhu YQ, Ellstrand NC, Lu BR. 2012. Sequence polymorphisms in wild, weedy, and cultivated rice suggest seed-shattering locus sh4 played a minor role in Asian rice domestication. Ecology and Evolution 9:2106-2113.
  • 2011
    • Allen, Michael F., McHughen, Alan: Solar Power in the Desert: Are the current large-scale solar developments really improving California’s environment? 2011.
    • Allen, E.B., R.J. Steers, et al.(2011). "Impacts of Fire and Invasive Species on Desert Soil Ecology." Rangeland Ecology & Management 64(5): 450-462.
    • Allen, M.F. (2011). "Linking water and nutrients through the vadose zone: a fungal interace between the soil and plant systems." Journal of Arid Land 3(3): 155-163.
    • Allen, M.F. J. Bartolome, M. Doran, V. Eviner, and M. Kelly. 2011. Strategic Plan for Sustainable Natural Ecosystems Initiative. April 7, 2011.
    • Barrows, C.W. (2011). "Sensitivity to climate change for two reptiles at the Mojave-Sonoran Desert interfact
    • Barrows, C.W., K.D. Fleming, et al. (2011). "Identifying Habitat Linkages to Maintain Connectivity for Corridor Dwellers in a Fragmented Landscape." Journal of Wildlife Management 75(3): 682-691.
    • Colyvan, M., J. Justus, and H. M. Regan. 2011. The conservation game. Biological Conservation 144:1246–1253.
    • Cox, R.D. and E.B. Allen (2011). "The roles of exotic grasses and forbs when restoring native species to highly invaded southern California annual grassland." Plant Ecology 212(10): 1699-1707.
    • Flores-Delgadillo, L., S. L. Fedick, E. Solleiro-Rebolledo, S. Palacios-Mayorga, P. Ortega-Larrocea, S. Sedov, and E. Osuna-Ceja. 2011. A sustainable system of a traditional precision agriculture in a Maya homegarden: Soil quality aspects. Soil & Tillage Research 113:112–120.
    • Franklin, J., H. M. Regan, L. A. Hierl, D. H. Deutschman, B. S. Johnson, and C. S. Winchell. 2011. Planning, Implementing, and Monitoring Multiple-Species Habitat Conservation Plans. American Journal of Botany 98:559–571.
    • Hargrove, L. and J.T. Rotenberry (2011). "Spatial structure and dynamics of breeding bird populations at a distribution margin, southern California." Journal of Biogeography 38(9): 1708-1716.
    • Hasselquist, N.J., G.W. Douhan, et al. (2011). "First report of the ectomycorrhizal status of boletes on the Northern Yucatan Peninsual, Mexico determined using isotopic methods." Mychorrhiza 21(6): 465-471.
    • Holt, J. S. 2011. Liming and agriculture in the central Pennines. The use of lime in land improvement from the late thirteenth century to c.1900. Agricultural History Review 59:332–333.
    • Lambrecht, S. C., L. S. Santiago, C. M. DeVan, J. Carlos Cervera, C. M. Stripe, L. A. Buckingham, and S. C. Pasquini. 2011. Plant Water Status and Hydraulic Conductance During Flowering in the Southern California Coastal Sage Shrub Salvia Mellifera (lamiaceae). American Journal of Botany 98:1286–1292.
    • Li, J., J. Ban, and L. S. Santiago. 2011. Nonparametric Tests for Homogeneity of Species Assemblages: A Data Depth Approach. Biometrics 67:1481–1488.
    • Lopez-Medellin, X., E. Ezcurra, C. Gonzalez-Abraham, J. Hak, L. S. Santiago, and J. O. Sickman. 2011. Oceanographic anomalies and sea-level rise drive mangroves inland in the Pacific coast of Mexico. Journal of Vegetation Science 22:143–151.
    • Martinez-Abrain, A., H. M. Regan, C. Viedma, E. Villuendas, M. Angel Bartolome, J. Antonio Gomez, and D. Oro. 2011. Cost-Effectiveness of Translocation Options for a Threatened Waterbird. Conservation Biology 25:726–735.
    • Marushia, R.G. and E.B. Allen (2011). "Control of Exotic Annual Grasses to Restore Native Forbs in Abandoned Agricultural Land." Resotration Ecology 19(1): 45-54.
    • Mizerek, T., H. M. Regan, and K. A. Hovel. 2011. Seagrass habitat loss and fragmentation influence management strategies for a blue crab Callinectes sapidus fishery. Marine Ecology Progress Series 427:247–257.
    • Ochoa-Hueso, R., R.R. Hernandez, et al. (2011). "Spatial distribution and physiology of biological soil crusts from semi-arid central Spain are related to soil chemistry and shrub cover." Soil Biology & Biochemistry 43(9): 1894-1901.
    • Onoda, Y., M. Westoby, P. B. Adler, A. M. F. Choong, F. J. Clissold, J. H. C. Cornelissen, S. Diaz, N. J. Dominy, A. Elgart, L. Enrico, P. V. A. Fine, J. J. Howard, A. Jalili, K. Kitajima, H. Kurokawa, C. McArthur, P. W. Lucas, L. Markesteijn, N. Perez-Harguindeguy, L. Poorter, L. Richards, L. S. Santiago, E. E. Sosinski, S. A. Van Bael, D. I. Warton, I. J. Wright, S. J. Wright, and N. Yamashita. 2011. Global patterns of leaf mechanical properties. Ecology Letters 14:301–312.
    • Prentice, T.R., R.A. Redak, et al. (2011). "Survey methodology and distribution of a cryptic Jerusalem cricket species, Stenopehnatus cahuilaensis Tinkham (Orthoptera: Stenopelmatidae: Stenopelmatinae)." Pan-Pacific Entomologist 87(1): 1-14.
    • Rao, L.E., R.J. Steers, et al. (2011). "Effects of natural and anthropogenic gradients on native and exotic winter annuals in a southern California Desert." Plant Ecology 212(7): 1079-1089.
    • Regan, H. M., D. A. Keith, T. J. Regan, M. G. Tozer, and N. Tootell. 2011. Fire management to combat disease: turning interactions between threats into conservation management. Oecologia 167:873–882.
    • Solleiro-Rebolledo, E., H. V. Cabadas-Baez, P. T. Pi, A. Gonzalez, S. L. Fedick, J. A. Chmilar, and D. Leonard. 2011. Genesis of hydromorphic Calcisols in wetlands of the northeast Yucatan Peninsula, Mexico. Geomorphology 135:322–331.
    • Steers, R.J. (2011). "Rock Outcrops Harbor Native Perennials in Type-Converted Coastal Scrub." Western North American Naturalist 70(4): 516-525.
    • Steers, R.J., J.L. Funk, et al.(2011). "Can resource-use traits predict native vs. exotic plant success in carbon amended soils?" Ecological Applications 21(4): 1211-1224.
    • Stemke, J. A., and L. S. Santiago. 2011. Consequences of light absorptance in calculating electron transport rate of desert and succulent plants. Photosynthetica 49:195–200.
    • Syphard, A. D., K. C. Clarke, J. Franklin, H. M. Regan, and M. Mcginnis. 2011. Forecasts of habitat loss and fragmentation due to urban growth are sensitive to source of input data. Journal of Environmental Management 92:1882–1893.
    • Vicars, W. C., and J. O. Sickman. 2011. Mineral dust transport to the Sierra Nevada, California: Loading rates and potential source areas. Journal of Geophysical Research-Biogeosciences 116:G01018.
    • Waterworth, R. A., R. A. Redak, and J. G. Millar. 2011. Pheromone-Baited Traps for Assessment of Seasonal Activity and Population Densities of Mealybug Species (Hemiptera: Pseudococcidae) in Nurseries Producing Ornamental Plants. Journal of Economic Entomology 104:555–565.
    • Wright, S. J., J. B. Yavitt, N. Wurzburger, B. L. Turner, E. V. J. Tanner, E. J. Sayer, L. S. Santiago, M. Kaspari, L. O. Hedin, K. E. Harms, M. N. Garcia, and M. D. Corre. 2011. Potassium, phosphorus, or nitrogen limit root allocation, tree growth, or litter production in a lowland tropical forest. Ecology 92:1616–1625.
    • Xia, H.-B., H. Xia, N. C. Ellstrand, C. Yang, and B.-R. Lu. 2011. Rapid evolutionary divergence and ecotypic diversification of germination behavior in weedy rice populations. New Phytologist 191:1119–1127.
  • 2010
    • Allen, M. F., E. B. Allen, J. L. Lansing, K. S. Pregitzer, R. L. Hendrick, R. W. Ruess, and S. L. Collins. 2010. Responses to chronic N fertilization of ectomycorrhizal pinon but not arbuscular mycorrhizal juniper in a pinon-juniper woodland. Journal of Arid Environments 74:1170–1176.
    • Barrows, C. W. and M. F. Allen. 2010. Patterns of occurrence of reptiles across a sand dune landscape. Journal of Arid Environments 74:186-192.
    • Barrows, C. W., J. T. Rotenberry, and M. F. Allen. 2010. Assessing sensitivity to climate change and drought variability of a sand dune endemic lizard. Biological Conservation 143:731–736.
    • Baucom, R. S., and J. S. Holt. 2010. Weeds of agricultural important: bridging the gap between evolutionary ecology and crop and weed science (vol 184, pg 741, 2009). New Phytologist 185:589–589.
    • Chen, X., B.-L. Li, and M. F. Allen. 2010. Characterizing urbanization, and agricultural and conservation land-use change in Riverside County, California, USA. Pages E164–E176 in B. L. Li, editor. Ecological Complexity and Sustainability. Wiley-Blackwell, Malden.
    • Colyvan, M., J. Justus, and H. M. Regan. 2010. The natural environment is valuable but not infinitely valuable. Conservation Letters 3:224–228.
    • Ellstrand, N. C., D. Biggs, A. Kaus, P. Lubinsky, L. A. McDade, K. Preston, L. M. Prince, H. M. Regan, V. Rorive, O. A. Ryder, and K. A. Schierenbeck. 2010a. Got Hybridization? A Multidisciplinary Approach for Informing Science Policy. Bioscience 60:384–388.
    • Ellstrand, N. C., S. M. Heredia, J. A. Leak-Garcia, J. M. Heraty, J. C. Burger, L. Yao, S. Nohzadeh-Malakshah, and C. E. Ridley. 2010b. Crops gone wild: evolution of weeds and invasives from domesticated ancestors. Evolutionary Applications 3:494–504.
    • Estrada-Median, H., Tuttle, W., Graham, R.C., Allen, M.F., Jimenez-Osornio, J.J. Identification of Underground Karst Features using Ground-Penetrating Radar in Northern Yucatan, Mexico. 2010. Vadese Zone Journal. 9: 653-661.
    • Fedick, S. L. 2010. The Maya Forest: Destroyed or cultivated by the ancient Maya? Proceedings of the National Academy of Sciences of the United States of America 107:953–954.
    • Fernanda Ricalde, M., J. Luis Andrade, R. Duran, J. Manuel Dupuy, J. Luis Sima, R. Us-Santamaria, and L. S. Santiago. 2010. Environmental regulation of carbon isotope composition and crassulacean acid metabolism in three plant communities along a water availability gradient. Oecologia 164:871–880.
    • Foley, M. M., B. S. Halpern, F. Micheli, M. H. Armsby, M. R. Caldwell, C. M. Crain, E. Prahler, N. Rohr, D. Sivas, M. W. Beck, M. H. Carr, L. B. Crowder, J. E. Duffy, S. D. Hacker, K. L. McLeod, S. R. Palumbi, C. H. Peterson, H. M. Regan, M. H. Ruckelshaus, P. A. Sandifer, and R. S. Steneck. 2010. Guiding ecological principles for marine spatial planning. Marine Policy 34:955–966.
    • Garcia-De la Pena, C., R. Paredes-Leon, B. O’Connor, H. Gadsden-Esparza, and C. W. Barrows. 2010. Acomatacarus Arizonensis (acari: Leeuwenhoekiidae): New Records from Three Species of Lizards in the Mexican Chihuahuan Desert. Southwestern Naturalist 55:278–279.
    • Goode, L. K., E. B. Erhardt, L. S. Santiago, and M. F. Allen. 2010. Carbon stable isotopic composition of soluble sugars in Tillandsia epiphytes varies in response to shifts in habitat. Oecologia 163:583–590.
    • Hasselquist, N. J., M. F. Allen, and L. S. Santiago. 2010a. Water relations of evergreen and drought-deciduous trees along a seasonally dry tropical forest chronosequence. Oecologia 164:881–890.
    • Hasselquist, N. J., L. S. Santiago, and M. F. Allen. 2010b. Belowground nitrogen dynamics in relation to hurricane damage along a tropical dry forest chronosequence. Biogeochemistry 98:89–100.
    • Hasselquist, N. J., R. Vargas, and M. F. Allen. 2010c. Using soil sensing technology to examine interactions and controls between ectomycorrhizal growth and environmental factors on soil CO2 dynamics. Plant and Soil 331:17–29.
    • Hokanson, K. E., N. C. Ellstrand, J. T. Ouedraogo, P. A. Olweny, B. A. Schaal, and A. F. Raybould. 2010. Biofortified sorghum in Africa: using problem formulation to inform risk assessment. Nature Biotechnology 28:900–903.
    • Holt, J. S. 2010. Structural characterization of the Brooker’s merocyanine/beta-cyclodextrin complex using NMR spectroscopy and molecular modeling. Journal of Molecular Structure 965:31–38.
    • Jones, T. J., C. D. Luton, L. S. Santiago, and G. Goldstein. 2010. Hydraulic constraints on photosynthesis in subtropical evergreen broad leaf forest and pine woodland trees of the Florida Everglades. Trees-Structure and Function 24:471–478.
    • Kitajima, K., K. E. Anderson, and M. F. Allen. 2010. Effect of soil temperature and soil water content on fine root turnover rate in a California mixed conifer ecosystem. Journal of Geophysical Research-Biogeosciences 115:G04032.
    • Lawson, D. M., H. M. Regan, P. H. Zedler, and A. Franklin. 2010. Cumulative effects of land use, altered fire regime and climate change on persistence of Ceanothus verrucosus, a rare, fire-dependent plant species. Global Change Biology 16:2518–2529.
    • Li, X., A. E. Miller, T. Meixner, J. P. Schimel, J. M. Melack, and J. O. Sickman. 2010. Adding an empirical factor to better represent the rewetting pulse mechanism in a soil biogeochemical model. Geoderma 159:440–451.
    • Michael Allen and Alan McHughen: Harness sun wisely. Don't let solar projects trample the environment. Local Views, Press Enterprise. December 25, 2010.
    • Marushia, R. G., M. W. Cadotte, and J. S. Holt. 2010. Phenology as a basis for management of exotic annual plants in desert invasions. Journal of Applied Ecology 47:1290–1299.
    • McFarland, J. W., R. W. Ruess, K. Kielland, K. Pregitzer, R. Hendrick, and M. Allen. 2010. Cross-Ecosystem Comparisons of In Situ Plant Uptake of Amino Acid-N and NH4 (+). Ecosystems 13:177–193.
    • Regan, H. M., J. B. Crookston, R. Swab, J. Franklin, and D. M. Lawson. 2010. Habitat fragmentation and altered fire regime create trade-offs for an obligate seeding shrub. Ecology 91:1114–1123.
    • Ridley, C. E., and N. C. Ellstrand. 2010. Rapid evolution of morphology and adaptive life history in the invasive California wild radish (Raphanus sativus) and the implications for management. Evolutionary Applications 3:64–76.
    • Sack, L., W. K. Cornwell, L. S. Santiago, M. M. Barbour, B. Choat, J. R. Evans, R. Munns, and A. Nicotra. 2010. A unique web resource for physiology, ecology and the environmental sciences: PrometheusWiki. Functional Plant Biology 37:687–693.
    • Salomon Ballina-Gomez, H., S. Iriarte-Vivar, R. Orellana, and L. S. Santiago. 2010. Compensatory growth responses to defoliation and light availability in two native Mexican woody plant species. Journal of Tropical Ecology 26:163–171.
    • Santiago, L. S. 2010. Can Growth Form Classification Predict Litter Nutrient Dynamics and Decomposition Rates in Lowland Wet Forest? Biotropica 42:72–79.
    • Sickman, J. O., C. L. DiGiorgio, M. L. Davisson, D. M. Lucero, and B. Bergamaschi. 2010. Identifying sources of dissolved organic carbon in agriculturally dominated rivers using radiocarbon age dating: Sacramento-San Joaquin River Basin, California. Biogeochemistry 99:79–96.
    • Silvera, K., L. S. Santiago, J. C. Cushman, and K. Winter. 2010. The incidence of crassulacean acid metabolism in Orchidaceae derived from carbon isotope ratios: a checklist of the flora of Panama and Costa Rica. Botanical Journal of the Linnean Society 163:194–222.
    • Sorensen, M. A., J. A. Bethke, and R. A. Redak. 2010. Potential Host Plants of Trirhabda geminata (Coleoptera: Chrysomelidae): Impacts on Survival, Development, and Feeding. Environmental Entomology 39:159–163.
    • Vargas, R., D. D. Baldocchi, M. F. Allen, M. Bahn, T. A. Black, S. L. Collins, J. C. Yuste, T. Hirano, R. S. Jassal, J. Pumpanen, and J. Tang. 2010a. Looking deeper into the soil: biophysical controls and seasonal lags of soil CO2 production and efflux. Ecological Applications 20:1569–1582.
    • Vargas, R., D. D. Baldocchi, J. I. Querejeta, P. S. Curtis, N. J. Hasselquist, I. A. Janssens, M. F. Allen, and L. Montagnani. 2010b. Ecosystem CO2 fluxes of arbuscular and ectomycorrhizal dominated vegetation types are differentially influenced by precipitation and temperature. New Phytologist 185:226–236.
    • Vargas, R., M. Detto, D. D. Baldocchi, and M. F. Allen. 2010c. Multiscale analysis of temporal variability of soil CO2 production as influenced by weather and vegetation. Global Change Biology 16:1589–1605.
    • Vargas, R., N. Hasselquist, E. B. Allen, and M. F. Allen. 2010d. Effects of a Hurricane Disturbance on Aboveground Forest Structure, Arbuscular Mycorrhizae and Belowground Carbon in a Restored Tropical Forest. Ecosystems 13:118–128.
    • Vasques, G. M., S. Grunwald, N. B. Comerford, and J. O. Sickman. 2010a. Regional modelling of soil carbon at multiple depths within a subtropical watershed. Geoderma 156:326–336.
    • Vasques, G. M., S. Grunwald, J. O. Sickman, and N. B. Comerford. 2010b. Upscaling of Dynamic Soil Organic Carbon Pools in a North-Central Florida Watershed. Soil Science Society of America Journal 74:870–879.
    • Vicars, W. C., J. O. Sickman, and P. J. Ziemann. 2010. Atmospheric phosphorus deposition at a montane site: Size distribution, effects of wildfire, and ecological implications. Atmospheric Environment 44:2813–2821.
  • 2009
    • Ahn, M.-Y., A. R. Zimmerman, N. B. Comerford, J. O. Sickman, and S. Grunwald. 2009. Carbon Mineralization and Labile Organic Carbon Pools in the Sandy Soils of a North Florida Watershed. Ecosystems 12:672–685.
    • Allen, Michael F. “Bidirectional Water Flows through the Soil-Fungal-Plant Mycorrhizal Continuum.” New Phytologist 182, no. 2 (2009): 290–293.
    • Allen, Michael F., N. Hasselquist, M. Taggart, K. Kitajima, R. Vargas, and E. Mayzlish-Gati. “Workshop: Integrating Soil Observing and Sensor Networks in Soil Ecological Studies.” Journal of Nematology 41, no. 4 (December 2009): 301–301.
    • Ayres, D., K. Schierenbeck, and N. Ellstrand. 2009. Introduction to “Ecological and Evolutionary Consequences after Invaders Hybridize”. Biological Invasions 11:1087–1088.
    • Barrows, C. W., and M. F. Allen. 2009a. Conservation Implications of Fragmentation in Deserts. (R. H. Webb, L. F. Fenstermaker, J. S. Heaton, D. L. Hughson, E. V. McDonald, and D. M. Miller, Eds.). Univ Nevada Press, Reno.
    • Barrows, C. W., and M. F. Allen. 2009b. Conserving Species in Fragmented Habitats: Population Dynamics of the Flat-Tailed Horned Lizard, Phrynosoma Mcallii. Southwestern Naturalist 54:307–316.
    • Barrows, C. W., E. B. Allen, M. L. Brooks, and M. F. Allen. 2009. Effects of an invasive plant on a desert sand dune landscape. Biological Invasions 11:673-686.
    • Barrows, C. W. and M. Fisher. 2009. Coachella Fringe-toed lizard. In Jones, Lawrence L. C., and Robert E. Lovich, eds. Lizards of the American Southwest: A Photographic Field Guide. Rio Nuevo Publishers, Tucson, Arizona.
    • Baucom, R. S., and J. S. Holt. 2009. Weeds of agricultural importance: bridging the gap between evolutionary ecology and crop and weed science. New Phytologist 184:741–743.
    • Celis-Murillo, A., J. L. Deppe, and M. F. Allen. 2009. Using soundscape recordings to estimate bird species abundance, richness, and composition. Journal of Field Ornithology 80:64–78.
    • Cernusak, L. A., G. Tcherkez, C. Keitel, W. K. Cornwell, L. S. Santiago, A. Knohl, M. M. Barbour, D. G. Williams, P. B. Reich, D. S. Ellsworth, T. E. Dawson, H. G. Griffiths, G. D. Farquhar, and I. J. Wright. 2009. Viewpoint: Why are non-photosynthetic tissues generally C-13 enriched compared with leaves in C-3 plants? Review and synthesis of current hypotheses. Functional Plant Biology 36:199–213.
    • Chappell, M. A., N. W. Bailey, R. A. Redak, M. Antolin, and M. Zuk. 2009. Metabolic Similarity Despite Striking Behavioral Divergence: Aerobic Performance in Low- and High-Density Forms of the Mormon Cricket. Physiological and Biochemical Zoology 82:405–418.
    • Dickens, S. J. M., E. B. Allen, and L. S. Santiago. 2009. Soil Responses Following Exotic Plant Invasion and Restoration of Coastal Sage Scrub of Southern California. Journal of Nematology 41:324–325.
    • Ellstrand, N. C. 2009. Evolution of invasiveness in plants following hybridization. Biological Invasions 11:1089–1091.
    • Fenn, M. E., J. O. Sickman, A. Bytnerowicz, D. W. Clow, N. P. Molotch, J. E. Pleim, G. S. Tonnesen, K. C. Weathers, P. E. Padgett, and D. H. Campbell. 2009. Methods for Measuring Atmospheric Nitrogen Deposition Inputs in Arid and Montane Ecosystems of Western North America. Air Quality and Ecological Impacts: Relating Sources to Effects 9:179–228.
    • Goode, L.K., Allen, M.F. 2009. Seed germination conditions and implications for establishment of an epiphyte, Aechmea bracteata (Bromeliaceae). Plant Ecol 204: 179-188.
    • Hasselquist, N. J., and M. F. Allen. 2009. Increasing Demands on Limited Water Resources: Consequences for Two Endangered Plants in Amargosa Valley, Usa. American Journal of Botany 96:620–626.
    • Martin, M. R., P. W. Tipping, and J. O. Sickman. 2009. Invasion by an exotic tree alters above and belowground ecosystem components. Biological Invasions 11:1883–1894.
    • May, M. R., M. C. Provance, A. C. Sanders, N. C. Ellstrand, and J. Ross-Ibarra. 2009. A Pleistocene Clone of Palmer’s Oak Persisting in Southern California. Plos One 4:e8346.
    • Miller, A. E., J. P. Schimel, J. O. Sickman, K. Skeen, T. Meixner, and J. M. Melack. 2009. Seasonal variation in nitrogen uptake and turnover in two high-elevation soils: mineralization responses are site-dependent. Biogeochemistry 93:253–270.
    • Prentice, T. R., and R. A. Redak. 2009. A new species of Ceraticelus Simon from southern California and a redescription of Ceraticelus phylax Ivie & Barrows, its probable sister species (Araneae: Linyphiidae). Zootaxa:39–56.
    • Querejeta, J. I., L. M. Egerton-Warburton, and M. F. Allen. 2009. Topographic position modulates the mycorrhizal response of oak trees to interannual rainfall variability. Ecology 90:649–662.
    • Quinn, L. D., and J. S. Holt. 2009. Restoration for Resistance to Invasion by Giant Reed (Arundo donax). Invasive Plant Science and Management 2:279–291.
    • Ridley, C. E., and N. C. Ellstrand. 2009. Evolution of enhanced reproduction in the hybrid-derived invasive, California wild radish (Raphanus sativus). Biological Invasions 11:2251–2264.
    • Rundel, P. W., E. A. Graham, M. F. Allen, J. C. Fisher, and T. C. Harmon. 2009. Environmental sensor networks in ecological research. New Phytologist 182:589–607.
    • Santiago, L. S., and S.-C. Kim. 2009. Correlated Evolution of Leaf Shape and Physiology in the Woody Sonchus Alliance (asteraceae: Sonchinae) in Macaronesia. International Journal of Plant Sciences 170:83–92.
    • Schuur, E. A. G., J. G. Vogel, K. G. Crummer, H. Lee, J. O. Sickman, and T. E. Osterkamp. 2009. The effect of permafrost thaw on old carbon release and net carbon exchange from tundra. Nature 459:556–559.
    • Schierenbeck, K. A., and N. C. Ellstrand. 2009. Hybridization and the evolution of invasiveness in plants and other organisms. Biological Invasions 11:1093–1105.
    • Sickman, James O., A. Albertin, M. W. Anderson, A. Pinowska, and R. J. Stevenson. “A Comparison of Internal and External Supply of Nutrients to Algal Mats in Two First Magnitude Springs in Florida.” Journal of Aquatic Plant Management 47 (July 2009): 135–144.
    • Silvera, K., L. S. Santiago, J. C. Cushman, and K. Winter. 2009. Crassulacean Acid Metabolism and Epiphytism Linked to Adaptive Radiations in the Orchidaceae. Plant Physiology 149:1838–1847.
    • Simonin, K. A., L. S. Santiago, and T. E. Dawson. 2009. Fog interception by Sequoia sempervirens (D. Don) crowns decouples physiology from soil water deficit. Plant Cell and Environment 32:882–892.
    • Vargas, R., E. B. Allen, and M. F. Allen. 2009a. Effects of Vegetation Thinning on Above- and Belowground Carbon in a Seasonally Dry Tropical Forest in Mexico. Biotropica 41:302–311.
    • Vargas, R., Trumbore, S.E., Allen, MF. 2009. Evidence of old carbon used to grow new fine roots in a tropical forest. New Phytologist. 182: 710-718.
    • Vasques, G. M., S. Grunwald, and J. O. Sickman. 2009. Modeling of Soil Organic Carbon Fractions Using Visible-Near-Infrared Spectroscopy. Soil Science Society of America Journal 73:176–184.
  • 2008
    • Allen, M.F. 2008. Water relations in the mycorrhizosphere. Progress in Botany, 70:257-276.
    • Ballina-Gomez, H. S., S. Iriarte-Vivar, R. Orellana, and L. S. Santiago. 2008. Growth, survival and herbivory of seedlings in Brosimum alicastrum (Moraceae), a species from the Neotropical undergrowth. Revista De Biologia Tropical 56:2055–2067.
    • Barrows, C.W., E.B. Allen, M.L. Brooks and M.F. Allen. On-Line. Effects of an invasive plant on a desert sand dune landscape. Biological Invasions (2008) doi 10.1007/s10530-008-9282-6.
    • Barrows, C.W., K.L. Preston, J.T. Rotenberry, M.F. Allen. 2008. Using occurrence records to model historic distributions and estimate habitat losses for two psammophilic lizards. Biological Conservation 141: 1885-1893.
    • Cornwell, W. K., J. H. C. Cornelissen, K. Amatangelo, E. Dorrepaal, V. T. Eviner, O. Godoy, S. E. Hobbie, B. Hoorens, H. Kurokawa, N. Perez-Harguindeguy, H. M. Quested, L. S. Santiago, D. A. Wardle, I. J. Wright, R. Aerts, S. D. Allison, P. van Bodegom, V. Brovkin, A. Chatain, T. V. Callaghan, S. Diaz, E. Garnier, D. E. Gurvich, E. Kazakou, J. A. Klein, J. Read, P. B. Reich, N. A. Soudzilovskaia, M. Victoria Vaieretti, and M. Westoby. 2008. Plant species traits are the predominant control on litter decomposition rates within biomes worldwide. Ecology Letters 11:1065–1071.
    • Cox, R.D. and E.B. Allen. 2008. Composition of soil seed banks in sofuthern California coastal sage scrub and adjacent exotic grassland. Plant Ecology, 198: 37-46.
    • Cox, R.D., E.B. Allen. 2008. Stability of exotic annual grasses following restoration efforts in southern California coastal sage scrub. Journal of Applied Ecology, 45:495-504.
    • Cross, W. F., A. Ramirez, A. Santana, and L. S. Santiago. 2008. Toward quantifying the relative importance of invertebrate consumption and bioturbation in Puerto Rican streams. Biotropica 40:477–484.
    • Deppe, J.L. & J.T. Rotenberry. 2008. Scale-dependent habitat use by fall migratory birds: Vegetation structure, floristics, and geography. Ecological Monographs, 78: 461-487.
    • Egerton-Warburton, L.M., J.I. Querejeta, and M.F. Allen. 2008. Efflux of hydraulically lifted water from mycorrhizal fungal hyphae during imposed drought. Plant Signaling and Behavior 3: 68-71.
    • Engle, D. L., J. O. Sickman, C. M. Moore, A. M. Esperanza, J. M. Melack, and J. E. Keeley. 2008. Biogeochemical legacy of prescribed fire in a giant sequoia-mixed conifer forest: A 16-year record of watershed balances. Journal of Geophysical Research-Biogeosciences 113:G01014.
    • Flores-Delgadilllo, L., E. Solleiro-Rebolledo, S. Sedov, S. Palacios-Mayorga, and S. Fedick. 2008. Agroforestry soil of the Quintana Roo, Mexico. (A. P. Rincon and R. O. Dominguez, Eds.). Real Soc Espanola Hist Natural, Madrid.
    • Goforth, B.R., R.A. Minnich. 2008. Densification, stand- replacement wildfire, and extirpation of mixed conifer forest in Cuyamaca Rancho State Park, southern California. Forest Ecology and Management, 256:36-45.
    • Goode, L. K., and M. F. Allen. 2008. The impacts of Hurricane Wilma on the epiphytes of El Eden Ecological Reserve, Quintana Roo, Mexico. Journal of the Torrey Botanical Society 135:377–387.
    • Halama, K.J., A.J. Malisch, M. Aspell, J.T. Rotenberry, M.F. Allen. 2008. Modeling the landscape niche characteristics of red diamond rattlesnakes ( Crotalus rubber): Implications for biology and conservation. In W.K. Hayes, K.R. Beaman, M.D. Cardwell and S.P. Bush (eds), The Biology of Rattlesnakes, pp. 463-472,. Loma Linda, CA: Loma Linda University Press.
    • Hasselquist, Niles J., and Michael F. Allen. “Increasing Demands on Limited Water Resources: Consequences for Two Endangered Plants in Amargosa Valley, USA.” American Journal of Botany 96, no. 3 (March 1, 2009): 620–626. doi:10.3732/ajb.0800181.
    • Hierl, L. A., J. Franklin, D. H. Deutschman, H. M. Regan, and B. S. Johnson. 2008. Assessing and prioritizing ecological communities for monitoring in a regional habitat conservation plan. Environmental Management 42:165–179.
    • Homyak P.M., R.D. Yanai, D.A. Burns, R.H. Germain, R.D. Briggs.  2008. Nitrogen immobilization by wood-chip application: protecting water quality in a northern hardwood forest. Forest Ecology and Management 255: 2589-2601
    • Hovel, K. A., and H. M. Regan. 2008. Using an individual-based model to examine the roles of habitat fragmentation and behavior on predator-prey relationships in seagrass landscapes. Landscape Ecology 23:75–89.
    • Jenerette, G.D., R.L. Scott, T.E. Huxman. 2008. Whole ecosystem metabolic puleses following precipitation events. Functional ecology, 22:924-930.
    • Johnson, N.C., D.L. Rowland, L. Corkidi, et al. 2008. Plant winners and losers during grassland N-eutrophication differ in biomass allocation and mychorrhizas. Ecology, 89: 2868-2878.
    • Keith, D. A., H. R. Akcakaya, W. Thuiller, G. F. Midgley, R. G. Pearson, S. J. Phillips, H. M. Regan, M. B. Araujo, and T. G. Rebelo. 2008. Predicting extinction risks under climate change: coupling stochastic population models with dynamic bioclimatic habitat models. Biology Letters 4:560–563.
    • Knick, S.T., J.T. Rotenberry, M. Leu. 2008. Habitat, topographical, and geographical components structuring shrubsteppe bird communities. Ecography, 31:389-400.
    • Markovchick-Nicholls, L., H.M. Regan, D.H. Deutschman, et al. 2008. Relationships between human disturbance and wildlife land use in urban habitat fragments. Conservation Biology, 22: 99- 109.
    • Marushia, R. G., and J. S. Holt. 2008. Reproductive strategy of an invasive thistle: effects of adults on seedling survival. Biological Invasions 10:913–924.
    • Marvier, M., Y. Carriere, N. Ellstrand, P. Gepts, P. Kareiva, E. Rosi-Marshall, B. E. Tabashnik, and L. L. Wolfenbarger. 2008. Ecology - Harvesting data from genetically engineered crops. Science 320:452–453.
    • Oneal, A.S. & J.T. Rotenberry. 2008. Riparian plant composition in an urbanizing landscape in southern California, USA. Landscape Ecology, 23(5): 553-567.
    • Padgett, P.E., R.A. Minnich. 2008. Wet deposition of nitrogenouse pollutants and the effect of storm duration and wind direction: A case study from inland southern California. Water, Air and Soil Pollution, 187:337-341.
    • Peluc, S.I., T.S. Sillett, J.T. Rotenberry. 2008. Adaptive phenotypic plasticity in an island songbird exposed to a novel predation risk. Behavioral Ecology, 19: 830-835.
    • Preston, K.L., J.T. Rotenberry, R.A. Redak, and M.F. Allen. 2008. Habitat shifts of endangered species under altered climate conditions: Importance of biotic interactions. Global Change Biology 14:2501-2515.
    • Quinn, L. D., and J. S. Holt. 2008. Ecological correlates of invasion by Arundo donax in three southern California riparian habitats. Biological Invasions 10:591–601.
    • Regan, H.M., L.A. Hierl, J. Franklin, et al. 2008. Species prioritization for monitoring and management in regional multiple species conservation plans. Diversity and Distributions, 14:462-471.
    • Ridley, C.E., Kim, S., Ellstrand, N.C. 2008. Bidirectional history of hybridization in California wild radish, Raphanus Sativus (Brassicaceae), as revealed by chloroplast DNA. American Journal of Botany 95: 1437-1442.
    • Schwabe, K.A., P.W. Schuhmann, K.A. Baerenklau, et al. 2008. Fundamentals of estimating the net benefits of ecosystem preservation: the case of the Salton Sea. Hydrobiologia, 604: 181-195.
    • Shen, W.J., G.D. Jenerette, D.F. Hi, et al. 2008. Effects of changing precipitation regimes on dryland soil respiration and C pool dynamics at rainfall event, seasonal and internnual scales. Journal of Geophysical Research- Biogeosciences, 113:Art #G03024.
    • Sickman, J. O., M. J. Zanoli, and H. L. Mann. 2008. Effects of urbanization on organic carbon loads in the Sacramento River, California (vol 43, art no W11422, 2008). Water Resources Research 44:W05701.
    • Thompson, S. N., and R. A. Redak. 2008. Parasitism of an insect Manduca sexta L. alters feeding behaviour and nutrient utilization to influence developmental success of a parasitoid. Journal of Comparative Physiology B-Biochemical Systemic and Environmental Physiology 178:515–527.
    • Vargas, R., M.F. Allen. 2008. Diel patterns of soil respiration in a tropical forest after Hurricane Wilma. Journal of Geophysical Research 11 G03021.
    • Vargas, R., M.F. Allen. 2008. Dynamics of fine root, fungal rhizomorphs and soil respiration in a mixed temperate forest: Integrating sensors and observations. Vadose Zone Journal 7: 1055-1064.
    • Vargas, R., M.F. Allen. 2008. Environmental controls and the influence of vegetation type, fine roots and rhizomorphs on diel and seasonal variation in soil respiration. New Phytologist 179: 460-471.
    • Vargas, R., M.F. Allen, E.B. Allen. 2008. Biomass and carbon accumulation in a fire chronosequence of a seasonally dry tropical forest. Global Change Biology 14: 109-124.
    • Vargas, R., S.E. Trumbore, M.F. Allen. 2008. In press. Evidence of old carbon used to grow new fine roots in a tropical forest. New Phytologist.
    • Vargas, R., and M. F. Allen. 2008c. Diel patterns of soil respiration in a tropical forest after Hurricane Wilma. Journal of Geophysical Research-Biogeosciences 113:G03021.
    • Vasques, G. M., S. Grunwald, and J. O. Sickman. 2008. Comparison of multivariate methods for inferential modeling of soil carbon using visible/near-infrared spectra. Geoderma 146:14–25.
  • 2007
    • Allen, E.B., P.J. Temple, A. Bytnerowicz, et al. 2007. Patterns of understory diversity in mixed coniferous forests of southern California impacted by air pollution. The Scientific World Journal, 7: 247-263.
    • Allen, M.F. 2007. Mycorrhizal fungi: highways for water and nutrients in arid soils. Vadose Zone Journal 6: 291-297.
    • Allen, M.F., R. Vargas, E. Graham, W. Swenson, M. Hamilton, M. Taggart, T.C. Harmon, A. Rat'ko, P. Rundel, B. Fulkerson, and D. Estrin. 2007. Soil sensor technology: Life within a pixel. BioScience 57: 859-867.
    • Barrows, C.W. and M.F. Allen. 2007. Biological monitoring and bridging the gap between land management and science. Natural Areas Journal 27: 194-197.
    • Barrows, C.W. and M.F. Allen. 2007. Community complexity: stratifying monitoring schemes within a desert sand dune landscape. Journal of Arid Environments 69: 315-330.
    • Barrows, C.W. and M.F. Allen. 2007. Conservation implications of fragmentation in desert ecosystems. In R. H. Webb (ed.) The Mohave Desert Science Symposium.
    • Barrows, C.W. and M.F. Allen. 2007. Persistence and local extinctions of endangered lizard Uma inornata on isolated habitat patches. Endangered Species Research 3: 61- 88.
    • Burger, J.C., Holt, J.M., Ellstrand, N.C. 2007. Rapid Phenotypic Divergence of Feral Rye from Domesticated Cereal Rye. Weed Science. 55: 204-211.
    • Cuevas-Glory, L. F., J. A. Pino, L. S. Santiago, and E. Sauri-Duch. 2007. A review of volatile analytical methods for determining the botanical origin of honey. Food Chemistry 103:1032–1043.
    • Dawson, T. E., S. S. O. Burgess, K. P. Tu, R. S. Oliveira, L. S. Santiago, J. B. Fisher, K. A. Simonin, and A. R. Ambrose. 2007. Nighttime transpiration in woody plants from contrasting ecosystems. Tree Physiology 27:561–575.
    • Egerton-Warburton, L. M., J. I. Querejeta, and M. F. Allen. 2007. Common mycorrhizal networks provide a potential pathway for the transfer of hydraulically lifted water between plants (vol 58, pg 1473, 2007). Journal of Experimental Botany 58:3484–3484.
    • Egerton-Warburton, L.M., N.C. Johnson, E.B. Allen. 2007. Mycorrhizal community dynamics following nitrogen fertilization: A cross-site test in five grasslands. Ecological Monographs, 77:527-544.
    • Elam, D.R., Ridley, C.E., Goodell, K., Ellstrand, N.C. 2007. Population size and relatedness affect fitness of a self-incompatible invasive plant. PNAS. 2: 549-552.
    • Ellstrand, N.C., Garner, L.C., Hedge, S., Guadagnuolo, R., Blancas, L. 2007. Spontaneous Hybridization between Maize and Teosinte. Journal of Heredity. 98: 183-187.
    • Ellstrand, N. C., L. C. Garner, S. Hegde, R. Guadagnuolo, and L. Blancas. 2007b. Spontaneous hybridization between maize and teosinte (vol 98, pg 183, 2007). Journal of Heredity 98.
    • Fedick, S. L. 2007. Ancient Maya: The rise and fall of a rainforest civilization. Latin American Antiquity 18:223–225.
    • Goforth, B.R., R.A. Minnich. 2007. Evidence, exaggeration, and error in historical accounts of chaparral wildfires in California. Ecological Applications, 17:779-790.
    • Hamilton, M., E.A. Graham, P.W. Rundel, M.F. Allen, W. Kaiser, M.H. Hansen, and D.L. Estrin. 2007. New approaches in embedded networked sensing for terrestrial ecological observatories. Environmental Engineering Science 24: 192-204.
    • Hayes, K. R., H. M. Regan, and M. A. Burgman. “Introduction to the Concepts and Methods of Uncertainty Analysis.” Edited by A. R. Kapuscinski, K. R. Hayes, S. Li, and G. Dana. Environmental Risk Assessment of Genetically Modified Organisms, Vol 3: Methodologies for Transgenic Fish 3 (2007): 188–208.
    • Keith, D. A., M. G. Tozer, T. J. Regan, and H. M. Regan. 2007. The persistence niche: what makes it and what breaks it for two fire-prone plant species. Australian Journal of Botany 55:273–279.
    • Koenig, W.D., L. Marcus, T.A. Scott, et al. 2007. West Nile virus and California breeding bird declines. EcoHealth, 4:18- 24.
    • Miller, A. E., J. P. Schimel, J. O. Sickman, T. Meixner, A. P. Doyle, and J. M. Melack. 2007. Mineralization responses at near-zero temperatures in three alpine soils. Biogeochemistry 84:233–245.
    • Querejeta, J.I. M.F. Allen, M.M. Alguacil, and A. Roldan. 2007. Plant isotopic composition provides insight into mechanisms underlying growth stimulation by AM fungi in a semiarid environment. Functional Plant Biology 34: 683-691.
    • Querejeta, J.I., L.M. Egerton-Warburton, and M.F. Allen. 2007. Hydraulic lift may buffer rhizosphere hyphae against the negative effects of severe soil drying in a California oak savanna. Soil Biology and Biochemistry 39: 409-417.
    • Querejeta, J.I., H. Estrada-Medina, M.F. Allen, and J.J. Jimenez-Osornio. 2007. Water source partitioning among trees growing on shallow karst soils in a seasonally dry tropical climate. Oecologia 152: 26-36.
    • Quinn, L. D., M. A. Rauterkus, and J. S. Holt. 2007. Effects of nitrogen enrichment and competition on growth and spread of giant reed (Arundo donax). Weed Science 55:319–326.
    • Radosevich, S. R., J. S. Holt, and C. M. Chersa. 2007a. Ecology of Weeds and Invasive Plants: Relationship to Agriculture and Natural Resource Management, 3rd Edition. Blackwell Science Publ, Oxford.
    • Radosevich, S. R., J. S. Holt, and C. M. Ghersa. 2007b. ECOLOGY OF WEEDS AND INVASIVE PLANTS RELATIONSHIP TO AGRICULTURE AND NATURAL RESOURCE MANAGEMENT Third Edition INTRODUCTION. Blackwell Science Publ, Oxford.
    • Radosevich, S. R., J. S. Holt, and C. M. Ghersa. 2007c. ECOLOGY OF WEEDS AND INVASIVE PLANTS RELATIONSHIP TO AGRICULTURE AND NATURAL RESOURCE MANAGEMENT Third Edition PREFACE. Blackwell Science Publ, Oxford.
    • Radosevich, S. R., J. S. Holt, and C. M. Ghersa. 2007d. Evolution of Weeds and Invasive Plants. Blackwell Science Publ, Oxford.
    • Radosevich, S. R., J. S. Holt, and C. M. Ghersa. 2007e. Herbicides. Blackwell Science Publ, Oxford.
    • Radosevich, S. R., J. S. Holt, and C. M. Ghersa. 2007f. Invasibility of Agricultural and Natural Ecosystems. Blackwell Science Publ, Oxford.
    • Radosevich, S. R., J. S. Holt, and C. M. Ghersa. 2007g. Plant-Plant Associations. Blackwell Science Publ, Oxford.
    • Radosevich, S. R., J. S. Holt, and C. M. Ghersa. 2007h. Principles. Blackwell Science Publ, Oxford.
    • Radosevich, S. R., J. S. Holt, and C. M. Ghersa. 2007i. Systems Approaches for Weed and Invasive Plant Management. Blackwell Science Publ, Oxford.
    • Radosevich, S. R., J. S. Holt, and C. M. Ghersa. 2007j. Weed and Invasive Plant Management Approaches, Methods, and Tools. Blackwell Science Publ, Oxford.
    • Radosevich, S. R., J. S. Holt, and C. M. Ghersa. 2007k. Weed Demography and Population Dynamics. Blackwell Science Publ, Oxford.
    • Radosevich, S. R., J. S. Holt, and C. M. Ghersa. 2007l. Weeds and Invasive Plants. Ecology of Weeds and Invasive Plants: Relationship to Agriculture and Natural Resource Management, 3rd Edition:3–33.
    • Regan, H. M., F. W. Davis, S. J. Andelman, A. Widyanata, and M. Freese. 2007. Comprehensive criteria for biodiversity evaluation in conservation planning. Biodiversity and Conservation 16:2715–2728.
    • Santiago, L.S. 2007. Extending the leaf economics spectrum to decomposition: Evidence from a tropical forest. Ecology, 88:1126-1131.
    • Santiago, L. S., and S. J. Wright. 2007. Leaf functional traits of tropical forest plants in relation to growth form. Functional Ecology 21:19–27.
    • Schierenbeck, K.A., Ellstrand, N.C., Blosser, G. 2007. Madroño 54: 105-116.
    • Sheldon, C., and J. S. Holt. 2007. Insertion of merocyanine dyes into Silicalite-1 hosts. Abstracts of Papers of the American Chemical Society 233:947–947.
    • Sickman, J. O., M. J. Zanoli, and H. L. Mann. 2007. Effects of urbanization on organic carbon loads in the Sacramento River, California. Water Resources Research 43:W11422.
    • Sirulnik, A.G., E.B. Allen, T. Meixner, and M.F. Allen. 2007. Impacts of anthropogenic N additions on nitrogen mineralization from plant ltiter in exotic annual grasslands. Soil Biology and Biochemistry 39: 24-32.
    • Sirulnik, A.G., E.B. Allen, T. Meixner, M.E. Fenn, and M.F. Allen. 2007. Changes in N cycling and microbial N with elevated N in exotic annual grasslands of southern California. Applied Soil Ecology 36: 1-9.
    • Thompson, S. N., and R. A. Redak. 2007. Nicotine moderates the effects of macronutrient balance on nutrient intake by parasitized Manduca sexta L. Journal of Comparative Physiology B-Biochemical Systemic and Environmental Physiology 177:375–391.
    • Wood, Y.A., M. Fenn, T. Meixner, et al. 2007. Smog nitrogen and the rapid acification of forest soil, San Bernardino Mountains, southern California. The Scientific World Journal, 7: 175-180.
    • Zimmer, K., M.A. Hynson, G. Gebauer, E.B. Allen, M.F. Allen, and D.J. Read. 2007. Wide geographic and ecological distribution of nitrogen and carbon gains from fungi in pyroloids and monotropoids (Ericaceae) in orchids. New Phytologist 175: 166-175.
  • 2006
    • Allen, M.F. and Kristine L. Preston (October 27, 2006) Core 2 Refinement Workshop Report.
    • Allen, M.F. 2006. Water dynamics of mycorrhizas in arid soils. In: Fungi in biogeochemical cycles. G.M. Gadd, editor, pp74-97. Cambridge University Press.
    • Barrows, C.W. 2006. Population dynamics of a threatened sand dune lizard. Southwestern Naturalist, 51:514- 523.
    • Barrows, C.W., M.F. Allen and J.T. Rotenberry. 2006. Boundary processes between a desert sand dune community and an encroaching suburban landscape. Biological Conservation 131: 486-494.
    • Burger, J.C., S. Lee, N.C. Ellstrand. 2006. Origina and genetic structure of feral rye in the western United States. Molecular Ecology, 15(9):2527-2539.
    • Chen, X., C.W. Barrows, B.-L. Li. 2006. Phase coupling and spatial synchrony of subpopulations of an endangered dune lizard. Landscape Ecology, 21:1185-1193.
    • Chen, X., C.W. Barrows, B.-L. Li. 2006. Is the Coachella Valley fringe-toed lizard ( Uma inornata) on the edge of extinction at Thousand Palms Preserve in California? Southwestern Naturalist, 51:28-34.
    • Chen, X., B.-L. Li, T. Scott, and M.F. Allen. 2006. Tolerance analysis of habitat loss for multispecies conservation in western Riverside County, California, USA. International Journal of Biodiversity Science and Management 2: 87-96.
    • Coviella, C. E., J. F. Garcia, D. R. Jeske, R. A. Redak, and R. F. Luck. 2006. Feasibility of tracking within-field movements of Homalodisca coagulata (Hemiptera : Cicadellidae) and estimating its densities using fluorescent dusts in mark-release-recapture experiments. Journal of Economic Entomology 99:1051–1057.
    • Ellstrand, N. C. 2006. Perspective: Lessons from the elephant that is biotechnology. Biochemistry and Molecular Biology Education 34:155–156.
    • Ellstrand, N. C., and K. A. Schierenbeck. 2006. Hybridization as a stimulus for the evolution of invasiveness in plants? Euphytica 148:35–46.
    • Fathe, K., J. S. Holt, S. P. Oxley, and C. J. Pursell. 2006. Infrared spectroscopy of solid hydrogen sulfide and deuterium sulfide. Journal of Physical Chemistry A 110:10793–10798.
    • Gillespie, I.G., E.B. Allen. 2006. Effects of soil and mycorrhizae from native and invaded vegetation on a rare California forb. Applied Soil Ecology, 32: 6-12.
    • Guadagnuolo, R., J. Clegg, N.C. Ellstrand. 2006. Relative fitness of transgenic vs. non-transgenic maize x teosinte hybrids: A field evaluation. Ecological Applications, 16: 1967- 1974.
    • Gutierrez, M. V., and L. S. Santiago. 2006. A comparison of sap flow measurements and potometry in two tropical lowland tree species with contrasting wood properties. Revista De Biologia Tropical 54:73–81.
    • Halpern, B. S., H. M. Regan, H. P. Possingham, and M. A. McCarthy. “Accounting for Uncertainty in Marine Reserve Design.” Ecology Letters 9, no. 1 (January 2006): 2–11.
    • Halpern, B. S., H. M. Regan, H. P. Possingham, and N. M. A. McCarthy. 2006b. Rejoinder: Uncertainty and decision making. Ecology Letters 9:13–14.
    • Hedge, S.G., J.D. Nason, J.M. Clegg, et al. 2006. The evolution of California's wild radish has resulted in the extinction of its progenitors. Evolution, 60:1187-1197.
    • Ignacio Querejeta, Jose, Hector Estrada-Medina, Michael F. Allen, Juan J. Jimenez-Osornio, and Rocio Ruenes. “Utilization of Bedrock Water by Brosimum Alicastrum Trees Growing on Shallow Soil atop Limestone in a Dry Tropical Climate.” Plant and Soil 287, no. 1–2 (September 2006): 187–197.
    • Leblond, J. D., M. R. Sengco, J. O. Sickman, J. L. Dahmen, and D. M. Anderson. 2006. Sterols of the syndinian dinoflagellate Amoebophrya sp., a parasite of the dinoflagellate Alexandrium tamarense (Dinophyceae). Journal of Eukaryotic Microbiology 53:211–216.
    • Li, X. Y., T. Meixner, J. O. Sickman, A. E. Miller, J. P. Schimel, and J. M. Melack. 2006. Decadal-scale dynamics of water, carbon and nitrogen in a California chaparral ecosystem: DAYCENT modeling results. Biogeochemistry 77:217–245.
    • MacIntyre, S., J. O. Sickman, S. A. Goldthwait, and G. W. Kling. 2006. Physical Pathways of Nutrient Supply in a Small, Ultraoligotrophic Arctic Lake during Summer Stratification. Limnology and Oceanography 51, no. 2: 1107–1124.
    • Marushia, R. G., and J. S. Holt. 2006. The effects of habitat on dispersal patterns of an invasive thistle, Cynara cardunculus. Biological Invasions 8:577–593.
    • Preston, K.L. & J.T. Rotenberry. 2006. The role of food, nest predation, and climate in timing of Wrentit reproductive activities. Condor, 108: 832-841.
    • Preston, K.L. & J.T. Rotenberry. 2006. Independent effects of food and predator-mediated processes on annual fecundity in a songbird. Ecology, 87:160-168.
    • Querejeta, J.I. H. Estrada-Medina, M.F. Allen, J.J. Jimenez-Osornio, and R. Ruenes. 2006. Utilization of bedrock water by Brosimum alicastrum trees growing on shallow soil atop limestone in a dry tropical climate. Plant and Soil 287: 187- 197.
    • Querejeta, J.I., M.F. Allen, F. Caravaca, and A. Roldan. 2006. Differential modulation of host plant d 13 C and d 18 O by native and non-native arbuscular mycorrhizal fungi in a semiarid environment. New Phytologist 169: 379-387.
    • Regan, H. M., M. Colyvan, and L. Markovchick-Nicholls. 2006. A formal model for consensus and negotiation in environmental management. Journal of Environmental Management 80:167–176.
    • Rotenberry, J.T., K.L. Preston, S.T. Knick. 2006. GIS-based niche modeling for mapping species' habitat. Ecology, 87(6): 1458-1464.
    • Scott, T.A., L. Fernandez, and M.F. Allen. 2006. Land use planning and the Endangered Species Act, p. 318-332, in Goble, D.D., Scott, J.M., and Davis, F.W. (eds), The Endangered Species Act at Thirty: Renewing the Conservation Promise, Volume II. Island Press, Washington, DC.
    • Siguenza, C., D.E. Crowley, E.B. Allen. 2006. Soil microorganisms of a native shrub and exotic grasses along a nitrogen deposition gradient in southern California. Applied Soil Ecology, 32: 13-26.
    • Siguenza, C., L. Corkidi, E.B. Allen. 2006. Feedbacks of soil inoculums of mycorrhizal fungi altered by N deposition on the growth of a native shru and an invasive annual grass. Plant and Soil, 286-153-165.
  • 2005
    • Allen, E.B., R.D. Cox, T.Tennant, et al. 2005. Landscape restoration in southern California forblands: Response of abandoned farmland to invasive annual grass control. Israel Journal of Plant Sciences, 53: 237-245.
    • Allen, M.F., John T. Rotenberry, Cameron W. Barrows, Veronique M. Rorive, Robert D. Cox, Lori Hargrove, Darrell Hutchinson, and Kathleen Fleming (September 1, 2005) Coachella Valley Multiple Species Habitat Conservation Plan Monitoring Program: 2002-2005 Progress Report.
    • Allen, M.F., John T. Rotenberry, Kristine L. Preston, Ken J. Halama, Tracy Tennant, Cameron W. Barrows, Vanessa Rivera del Rio, Antonio Celis Murrillo, Xiongwen Chen, and Veronique M. Rorive (June 1, 2005) CCB 2005: Towards developing a monitoring framework for Multiple Species Habitat Conservation Plans. Part I.
    • Allen, M.F., J.N. Klironomos, K.K. Treseder. 2005. Responses of soil biota to elevated CO2 in a chaparral ecosystem. Ecological Applications, 15(5): 1701-1711.
    • Allen, M.F., E.B. Allen, A. Gómez-Pompa. 2005. Effects of mycorrhizae and nontarget organisms on restoration of a seasonal tropical forest in Quintana Roo, Mexico: Factors limiting tree establishment. Restoration Ecology, 13(2): 325- 333.
    • Baerenklau, K.A. 2005. Cost-effectiveness of the conservation reserve program: Discussion. American Journal of Agricultural Economics, 87:1256-1257.
    • Barrows, C.W., M.B. Swartz, W.L. Hodges, et al. 2005. A framework for monitoring multiple-species conservation plan. Journal of Wildlife Management, 69(4): 1333-1345.
    • Blua, M. J., K. Campbell, D. J. W. Morgan, and R. A. Redak. 2005. Impact of a screen barrier on dispersion behavior of Homalodisca coagulata (Hemiptera : Cicadellidae). Journal of Economic Entomology 98:1664–1668.
    • Bornyasz, M. A., R. C. Graham, and M. F. Allen. “Ectomycorrhizae in a Soil-Weathered Granitic Bedrock Regolith: Linking Matrix Resources to Plants.” Geoderma 126, no. 1–2 (May 2005): 141–160. doi:10.1016/j.geoderma.2004.11.023.
    • Burger, J. C., and N. C. Ellstrand. 2005. Feral rye - Evolutionary origins of a weed. (J. Gressel, Ed.). Crc Press-Taylor & Francis Group, Boca Raton.
    • Chen, X.W., B.-L. Li, T.A. Scott, et al. 2005. Spatial structure of multispecies distributions in southern California, USA. Biological Conservation, 124(2): 169-175.
    • Decruyenaere, J. G., and J. S. Holt. 2005. Ramet demography of a clonal invader, Arundo donax (Poaceae), in Southern California. Plant and Soil 277:41–52.
    • Deppe, J.L. & J.T. Rotenberry. 2005. Temporal patterns in fall migrant communities in Yucatan, Mexico. Condor, 107:228-243.
    • Klironomos, J. N., M. F. Allen, M. C. Rillig, J. Piotrowski, S. Makvandi-Nejad, B. E. Wolfe, and J. R. Powell. “Abrupt Rise in Atmospheric CO2 Overestimates Community Response in a Model Plant-Soil System.” Nature 433, no. 7026 (February 10, 2005): 621–624. doi:10.1038/nature03268.
    • Lee, P.Y.; J.T. Rotenberry. 2005. Relationships between bird species and tree species assemblages in forested habitats of eastern North America. Journal of Biogeography, 32(7): 1139- 1150.
    • Miller, A. E., J. P. Schimel, T. Meixner, J. O. Sickman, and J. M. Melack. 2005. Episodic rewetting enhances carbon and nitrogen release from chaparral soils. Soil Biology & Biochemistry 37:2195–2204.
    • Regan, H. M., Y. Ben-Haim, B. Langford, W. G. Wilson, P. Lundberg, S. J. Andelman, and M. A. Burgman. 2005. Robust decision-making under severe uncertainty for conservation management. Ecological Applications 15:1471–1477.
    • Santiago, L. S., and S. S. Mulkey. 2005. Leaf productivity along a precipitation gradient in lowland Panama: patterns from leaf to ecosystem. Trees-Structure and Function 19:349–356.
    • Santiago, L. S., E. a. G. Schuur, and K. Silvera. 2005a. Nutrient cycling and plant-soil feedbacks along a precipitation gradient in lowland Panama. Journal of Tropical Ecology 21:461–470.
    • Santiago, L. S., K. Silvera, J. L. Andrade, and T. E. Dawson. 2005b. Use of stable isotopes in tropical biology. Interciencia 30:536–+.
    • Silvera, K., L. S. Santiago, and K. Winter. 2005. Distribution of crassulacean acid metabolism in orchids of Panama: evidence of selection for weak and strong modes. Functional Plant Biology 32:397–407.
    • Thompson, S. N., and R. A. Redak. 2005. Feeding behaviour and nutrient selection in an insect Manduca sexta L. and alterations induced by parasitism. Journal of Comparative Physiology a-Neuroethology Sensory Neural and Behavioral Physiology 191:909–923.
    • Thompson, S. N., R. A. Redak, and L. W. Wang. 2005a. Host nutrition determines blood nutrient composition and mediates parasite developmental success: Manduca sexta L. parasitized by Cotesia congregata (Say). Journal of Experimental Biology 208:625–635.
    • Thompson, S. N., R. A. Redak, and L. W. Wang. 2005b. Nutrition interacts with parasitism to influence growth and physiology of the insect Manduca sexta L. Journal of Experimental Biology 208:611–623.
    • Treseder, K. K., M. F. Allen, R. W. Ruess, K. S. Pregitzer, and R. L. Hendrick. “Lifespans of Fungal Rhizomorphs under Nitrogen Fertilization in a Pinyon-Juniper Woodland.” Plant and Soil 270, no. 1–2 (March 2005): 249–255. doi:10.1007/s11104-004-1559-7.
    • White, V. A., and J. S. Holt. 2005. Competition of artichoke thistle (Cynara cardunculus) with native and exotic grassland species. Weed Science 53:826–833.
  • 2004
    • Andelman, S. J., C. Groves, and H. M. Regan. 2004. A review of protocols for selecting species at risk in the context of US Forest Service viability assessments. Acta Oecologica-International Journal of Ecology 26:75–83.
    • Burks, R. A., and R. A. Redak. 2004. New species of Pteromalidae and Torymidae (Hymenoptera : Chalcidoidea) from California, with taxonomic notes. Zootaxa:1–20.
    • Fedick, S.L., B.A. Morrison. 2004. Ancient use and manipulation of landscape in the Yalahau region of the northern Maya lowlands. Agriculture and Human Values, 21:207- 219.
    • Gillespie, I.G., E.B. Allen. 2004. Fire and competition in a southern California grassland: impacts on the rare forb Erodium macrophyllum. Journal of Applied Ecology, 41: 643-652.
    • Gómez-Pompa, A. 2004. The role of biodiversity scientists in a troubled world. BioScience, 54:217-225.
    • Hamill, A. S., J. S. Holt, and C. A. Mallory-Smith. 2004. Contributions of weed science to weed control and management. Weed Technology 18:1563–1565.
    • Holt, J. S. 2004. Principles of weed management in agroecosystems and wildlands? Weed Technology 18:1559–1562.
    • Huth, A. K., A. Leydecker, J. O. Sickman, and R. C. Bales. 2004. A two-component hydrograph separation for three high-elevation catchments in the Sierra Nevada, California. Hydrological Processes 18:1721–1733.
    • John, H., V. Karicheti, P. Ge, C. Maake, S. Eliasof, A. Siso, L. Ezquerra, B. Franklin, D. M. Schmid, T. Lehmann, D. Hauri, and L. S. Santiago. 2004. Gene expression pattern defines distinct clinical bladder dysfunction. Journal of Urology 171:133–133.
    • Khudamrongsawat, J., R. Tayyar, and J. S. Holt. 2004. Genetic diversity of giant reed (Arundo donax) in the Santa Ana River, California. Weed Science 52:395–405.
    • Redak, R. A., A. H. Purcell, J. R. S. Lopes, M. J. Blua, R. F. Mizell, and P. C. Andersen. 2004. The biology of xylem fluid-feeding insect vectors of Xylella fastidiosa and their relation to disease epidemiology. Annual Review of Entomology 49:243–270.
    • Redeker, K.R., K.K. Treseder, M.F. Allen. 2004. Ectomycorrhizal fungi: A new source of atmospheric methyl halides? Global Change Biology, 10: 1009-1016.
    • Regan, H. M., S. Ferson, and D. Berleant. 2004. Equivalence of methods for uncertainty propagation of real-valued random variables. International Journal of Approximate Reasoning 36:1–30.
    • Santiago, L. S., G. Goldstein, F. C. Meinzer, J. B. Fisher, K. Machado, D. Woodruff, and T. Jones. 2004a. Leaf photosynthetic traits scale with hydraulic conductivity and wood density in Panamanian forest canopy trees. Oecologia 140:543–550.
    • Santiago, L. S., K. Kitajima, S. J. Wright, and S. S. Mulkey. 2004b. Coordinated changes in photosynthesis, water relations and leaf nutritional traits of canopy trees along a precipitation gradient in lowland tropical forest. Oecologia 139:495–502.
    • Treseder, K.K., C.A. Masiello, J.L. Lansing. 2004. Species-specific measurements of ectomycorrhizal turnover under N-fertilization: combining isotopic and genetic approaches. Oecologia, 138: 419-425.
    • Yoshida, L.C., E.B. Allen, 2004. N-15 uptake by mycorrhizal native and invasive plants from a N-eutrophied shrubland: A greenhouse experiment. Biology and Fertility of Soils, 39: 243- 248.
  • 2003
    • Allen, E.B., M.F. Allen, L. Egerton-Warburton. 2003. Impacts of early- and late-seral mycorrhizae during restoration in seasonal tropical forest, Mexico. Ecological Applications, 13: 1701-1717.
    • Allen, M. F., A. Gomez-Pompa, S. L. Fedick, and J. J. Jimenez-Osornio. 2003. The Maya lowlands: A case study for the future? Conclusions. (A. GomezPompa, M. F. Allen, S. L. Fedick, and J. J. JimenezOsornio, Eds.). Food Products Press, Binghamton.
    • Allen, M.F., Thomas A. Scott, Edith B. Allen, Steve Boyd, Richard Minnich, James Malcolm, Leonard Nunney, Richard Redak, and David Reznick (April 17, 2003) Scientific Review Panel Review of: Final Draft Western Riverside County MSHCP Document.
    • Barrett, S. C. H., S. Linington, A. G. Stephenson, L. Comai, and N. C. Ellstrand. 2003. Current knowledge of gene flow in plants: implications for transgene flow - Discussion. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences 358:1170–1170.
    • Burger, J.C., R.A. Redak, E.B. Allen, J.T. Rotenberry. 2003. Restoring arthropod communities in coastal sage scrub. Conservation Biology, 17(2): 460-467.
    • Burks, R. A., and R. A. Redak. 2003. The identity and reinstatement of Homalodisca liturata Ball and Phera lacerta Fowler (Hemiptera : Cicadellidae). Proceedings of the Entomological Society of Washington 105:674–678.
    • Clow, D. W., J. O. Sickman, R. G. Striegl, D. P. Krabbenhoft, J. G. Elliott, M. Dornblaser, D. A. Roth, and D. H. Campbell. 2003. Changes in the chemistry of lakes and precipitation in high-elevation national parks in the western United States, 1985-1999. Water Resources Research 39:1171.
    • Dunning, C. E., R. A. Redak, and T. D. Paine. 2003. Preference and performance of a generalist insect herbivore on Quercus agrifolia and Quercus engelmannii seedlings from a southern California oak woodland. Forest Ecology and Management 174:593–603.
    • Ellstrand, N. C. 2003a. Current knowledge of gene flow in plants: implications for transgene flow. Philosophical Transactions of the Royal Society B-Biological Sciences 358:1163–1170.
    • Ellstrand, N. C. 2003b. Going to “great lengths” to prevent the escape of genes that produce specialty chemicals. Plant Physiology 132:1770–1774.
    • Fedick, S. L. 2003. Archaeological evidence for ancient and historic resource use associated with the El Eden wetland, Northern Quintana Roo, Mexico. (A. GomezPompa, M. F. Allen, S. L. Fedick, and J. J. JimenezOsornio, Eds.). Food Products Press, Binghamton.
    • Fenn, M. E., J. S. Baron, E. B. Allen, H. M. Rueth, K. R. Nydick, L. Geiser, W. D. Bowman, J. O. Sickman, T. Meixner, D. W. Johnson, and P. Neitlich. 2003a. Ecological effects of nitrogen deposition in the western United States. Bioscience 53:404–420.
    • Fenn, M. E., R. Haeuber, G. S. Tonnesen, J. S. Baron, S. Grossman-Clarke, D. Hope, D. A. Jaffe, S. Copeland, L. Geiser, H. M. Rueth, and J. O. Sickman. 2003b. Nitrogen emissions, deposition, and monitoring in the western United States. Bioscience 53:391–403.
    • Ellstrand, N.C. 2003. Current knowledge of gene flow in plants: implications for transgene flow. The Royal Society. 358: 1163-1170.
    • Fenn, M.E., J.S. Barton, E.B. Allen, et al. 2003. Ecological effects of nitrogen deposition in the western United States. BioScience, 53: 404-420.
    • Gómez-Pompa, A., M.F. Allen, S.L. Fedick, J.J. Jiménez- Osornio (Eds). 2003. The lowland Maya area: Three millennia at the human-wildland interface. New York: Haworth Press. 659pp.
    • Green, A. K., C. P. Horay, A. M. Lloyd, P. J. Abraham, T. F. Cox, J. S. Holt, and D. J. Savage. 2003. The effect of a 2% zinc citrate, 0.3% Triclosan dentifrice on plaque acid production following consumption of a snackfood. International Dental Journal 53:385–390.
    • Neel, M. C., and N. C. Ellstrand. 2003. Conservation of genetic diversity in the endangered plant Eriogonum ovalifolium var. vineum (Polygonaceae). Conservation Genetics 4:337–352.
    • Regan, H. M., H. R. Akcakaya, S. Ferson, K. V. Root, S. Carroll, and L. R. Ginzburg. 2003a. Treatments of uncertainty and variability in ecological risk assessment of single-species populations. Human and Ecological Risk Assessment 9:889–906.
    • Regan, H. M., T. D. Auld, D. A. Keith, and M. A. Burgman. 2003b. The effects of fire and predators on the long-term persistence of an endangered shrub, Grevillea caleyi. Biological Conservation 109:73–83.
    • Johnson, N.C., D.L. Rowland, L. Corkidi, et al. 2003. Nitrogen enrichment alters mycorrhizal allocation at five mesic to semiarid grasslands. Ecology, 84(7): 1895-1908.
    • Knick, S.T., D.S. Dobkin, J.R. Rotenberry, et al. 2003. Teeterin on the dge or too late? Conservation and research issues for avifauna of sagebrush habitats. Condor, 105: 611-634.
    • Neel, M.C., Ellstrand, N.C. 2003. Conservation of genetic diversity in the endangered plant Eriogonum ovalifolium var. vineum (Polygonaceae). Conservation Genetics. 4:337-352.
    • Nunney, L. 2003. The cost of natural selection revisited. Annales Zoologici Fennici, 40:185-194.
    • Querejeta, J.I., J.M. Barea, M.F. Allen, et al. 2003. Direct nocturnal water transfer from oaks to their mycorrhizal symbionts during severe soil drying. Oecologia, 134:55-64.
    • Querejeta, J.I., L.M. Egerton-Warburton, M.F. Allen. 2003. Direct nocturnal water transfer from oaks to their mycorrhizal symbionts during severe soil drying. Oecologia, 134: 55-64.
    • Ruess, R.W., R.L. Hendrick, A.J. Burton, et al. 2003. Coupling fine root dynamics with ecosystem crbon cycling in black spruce forests of interior Alaska. Ecological Monographs, 73: 643-662.
    • Santiago, L. S., and S. S. Mulkey. 2003. A test of gas exchange measurements on excised canopy branches of ten tropical tree species. Photosynthetica 41:343–347.
    • Sickman, J. O., A. Leydecker, C. C. Y. Chang, C. Kendall, J. M. Melack, D. M. Lucero, and J. Schimel. 2003a. Mechanisms underlying export of N from high-elevation catchments during seasonal transitions. Biogeochemistry 64:1–24.
    • Sickman, J. O., J. M. Melack, and D. W. Clow. 2003b. Evidence for nutrient enrichment of high-elevation lakes in the Sierra Nevada, California. Limnology and Oceanography 48:1885–1892.
    • Tayyar, R. I., J. H. T. Nguyen, and J. S. Holt. 2003. Genetic and morphological analysis of two novel nutsedge biotypes from California. Weed Science 51:731–739.
    • Treseder, K.K., L.M. Egerton-Warburton, M.F. Allen, et al. 2003. Alteration of soil carbon pools and communities of mycorrhizal fungi in chaparral exposed to elevated carbon dioxide. Ecosystems, 6: 786-796.
  • 2002
    • Burton, A.J., K.S. Pregitzer, R.W. Ruess, R.L. Hendrick, M.F. Allen. 2002. Root respiration in North American forests: effects of nitrogen concentration and temperature across biomes. Oecologia, 131: 559-568.
    • Cione, N.K., P.E. Padgett, E.B. Allen. 2002. Restoration of a native shrubland impacted by exotic grasses, frequent fire, and nitrogen deposition in southern California. Restoration Ecology, 10: 376-384.
    • Corkidi, L., D.L. Rowland, N.C. Johnson, et al. 2002. Nitrogen fertilization alters the functioning of arbuscular mycorrhizas at two semiarid grasslands. Plant and Soil, 240:299-310.
    • Elith, J., M. A. Burgman, and H. M. Regan. 2002. Mapping epistemic uncertainties and vague concepts in predictions of species distribution. Ecological Modelling 157:313–329.
    • Housman, D. C., M. V. Price, and R. A. Redak. 2002. Architecture of coastal and desert Encelia farinosa (Asteraceae): Consequences of plastic and heritable variation in leaf characters. American Journal of Botany 89:1303–1310.
    • Nunney, L. The effective size of annual plant populations: The interaction of a seed bank with fluctuating population size in maintaining genetic variation. American Naturalist, 160:195- 204.
    • Pregitzer, K.S., J.L. DeForest, A.J. Burton, et al. 2002. Fine root architecture of nine North American trees. Ecological Monographs, 72: 293-309.
    • Regan, H. M., M. Colyvan, and M. A. Burgman. 2002a. A taxonomy and treatment of uncertainty for ecology and conservation biology. Ecological Applications 12:618–628.
    • Regan, H. M., B. Y. Hope, and S. Ferson. 2002b. Analysis and portrayal of uncertainty in a food-web exposure model. Human and Ecological Risk Assessment 8:1757–1777.
    • Regan, H. M., B. E. Sample, and S. Ferson. 2002c. Comparison of deterministic and probabilistic calculation of ecological soil screening levels. Environmental Toxicology and Chemistry 21:882–890.
    • Sickman, J. O., J. M. Melack, and J. L. Stoddard. 2002. Regional analysis of inorganic nitrogen yield and retention in high-elevation ecosystems of the Sierra Nevada and Rocky Mountains. Biogeochemistry 57:341–374.
    • Thompson, S. N., R. A. Redak, and D. B. Borchardt. 2002. The glucogenic response of a parasitized insect Manduca sexta L. is partially mediated by differential nutrient intake. Biochimica Et Biophysica Acta-General Subjects 1571:138–150.
  • 2001
    • Bartsch, D., Brand, U., Morak, C., Polh-Orf, M., Schuphan, I., Ellstrand, N.C. 2001. Biosafety of hybrids between transgenic virus-resistant sugar beet and swiss chard. Ecological Applications. 11: 142-147.
    • Bethke, J. A., M. J. Blua, and R. A. Redak. 2001a. Effect of selected insecticides on Homalodisca coagulata (Homoptera : Cicadellidae) and transmission of oleander leaf scorch in a greenhouse study. Journal of Economic Entomology 94:1031–1036.
    • Bethke, J. A., K. A. Campbell, M. J. Blua, R. A. Redak, and D. A. Yanega. 2001b. Range extension of Pseneo punctatus Fox and notes on predation of an introduced sharpshooter, Homalodisca coagulata (Say). Pan-Pacific Entomologist 77:54–56.
    • Blua, M. J., R. A. Redak, D. J. W. Morgan, and H. S. Costa. 2001. Seasonal flight activity of two Homalodisca species (Homoptera : Cicadellidae) that spread Xylella fastidiosa in southern California. Journal of Economic Entomology 94:1506–1510.
    • Burger, J.C., M.A. Patten, T.R. Prentice, et al. 2001. Evidence for spider community resilience to invasion by non-native spiders. Biological Conservation, 98:241-249.
    • Decruyenaere, J. G., and J. S. Holt. 2001. Seasonality of clonal propagation in giant reed. Weed Science 49:760–767.
    • Egerton-Warburton, L.M., R.C. Graham, E.B. Allen, et al. 2001. Reconstruction of the historical changes in mycorrhizal fungal communities under anthropogenic nitrogen deposition.
    • Egerton-Warburton, L. M., R. C. Graham, E. B. Allen, and M. F. Allen. 2001. Reconstruction of the historical changes in mycorrhizal fungal communities under anthropogenic nitrogen deposition. Proceedings of the Royal Society of London. Series B: Biological Sciences 268:2479–2484.
    • Ellstrand, N. C. 2001a. When transgenes wander, should we worry? Plant Physiology 125:1543–1545.
    • Ellstrand, N. C. 2001b. Crop transgenes in natural populations. Abstracts of Papers of the American Chemical Society 221:U24–U25.
    • Leydecker, A., J. O. Sickman, and J. M. Melack. 2001. Spatial scaling of hydrological and biogeochemical aspects of high-altitude catchments in the Sierra Nevada, California, USA. Arctic Antarctic and Alpine Research 33:391–396.
    • Luft, P. A., T. D. Paine, and R. A. Redak. 2001. Limiting the potential for intraspecific competition: regulation of Trioza eugeniae oviposition on unexpanded leaf tissue. Ecological Entomology 26:395–403.
    • Metcalf, A.E., L. Nunney, B.C. Hyman. 2001. Geographic patterns of genetic differentiation within the restricted range of the endangered Stephens' kangaroo rate Dipodomys stephensi.
    • Montalvo, A.M., Ellstrand, N.C. 2001. Nonlocal transplantation and outbreeding depression in the subshrub Lotus Scoparius (Fabaceae). American Journal of Beauty. 88: 258-269.
    • Neel, M.C., Ellstrand, N.C. 2001. Patterns of allozyme diversity in the threatened plant Erigeron Parishii (Asteraceae). American Journal of Botany. 88: 810-818.
    • Neel, M. C., J. Ross-Ibarra, and N. C. Ellstrand. 2001. Implications of mating patterns for conservation of the endangered plant Eriogonum ovalifolium var. vineum (Polygonaceae). American Journal of Botany 88:1214–1222.
    • Prentice, T. R., J. C. Burger, W. R. Icenogle, and R. A. Redak. 2001. Spiders from Riversidian coastal sage scrub with comparisons to Diegan scrub fauna (Arachnida : Araneae). Pan-Pacific Entomologist 77:90–122.
    • Regan, H. M., R. Lupia, A. N. Drinnan, and M. A. Burgman. 2001a. The currency and tempo of extinction. American Naturalist 157:1–10.
    • Regan, T. J., H. M. Regan, K. Bonham, R. J. Taylor, and M. A. Burgman. 2001b. Modelling the impact of timber harvesting on a rare carnivorous land snail (Tasmaphena lamproides) in northwest Tasmania, Australia. Ecological Modelling 139:253–264.
    • Sakai, A. K., F. W. Allendorf, J. S. Holt, D. M. Lodge, J. Molofsky, K. A. With, S. Baughman, R. J. Cabin, J. E. Cohen, N. C. Ellstrand, D. E. McCauley, P. O’Neil, I. M. Parker, J. N. Thompson, and S. G. Weller. 2001. The population biology of invasive species. Annual Review of Ecology and Systematics 32:305–332.
    • Scott, T.A., W. Wehtje, M. Wehtje. 2001. The need for strategic planning in passive restoration of wildlife populations. Restoration Ecology, 9:262-271.
    • Sickman, J. O., A. Leydecker, and J. M. Melack. 2001. Nitrogen mass balances and abiotic controls on N retention and yield in high-elevation catchments of the Sierra Nevada, California, United States. Water Resources Research 37:1445–1461.
    • Tennant, T., Michael F. Allen, and Fred Edwards (July 12, 2001) Perspectives in Conservation Biology in Southern California: I. Current Extinction Rates and Causes
    • Thompson, S. N., R. A. Redak, and L. W. Wang. 2001. Altered dietary nutrient intake maintains metabolic homeostasis in parasitized larvae of the insect Manduca sexta L. Journal of Experimental Biology 204:4065–4080.
  • 2000
    • Allen, M.F. & T. Tennant. (November 2, 2000) Evaluation of Critical Habitat for the California red-legged frog ( Rana aurora draytonii )
    • Barrows, C. W. 2000. Tenebrionid species richness and distribution in the Coachella Valley sand dunes (Coleoptera : Tenebrionidae). Southwestern Naturalist 45:306–312.
    • Chase, M.K., W.B. Kristan, A.J. Lynam, et al. 2000. Single species as indicators of species richness and composition in California coastal sage scrub birds and small mammals. Conservation Biology, 14:474-487.
    • Costa, H. S., M. S. Blua, J. A. Bethke, and R. A. Redak. 2000. Transmission of Xylella fastidiosa to oleander by the glassywinged sharpshooter, Homalodisca coagulata. Hortscience 35:1265–1267.
    • Ellstrand, N. 2000. The elephant that is biotechnology: Comments on “Genetically modified crops: Risks and promise” by Gordon Conway. Conservation Ecology 4:8.
    • Ellstrand, N.C., Schierenbeck, K.A. 2000. Hybridization as a stimulus for the evolution of invasiveness in plants? PNAS, 97:7043-7050.
    • Fedick, S. L. 2000. Archaeologies of landscape: Contemporary perspectives. Latin American Antiquity 11:214–215.
    • Fedick, S. L., B. A. Morrison, B. J. Andersen, S. Boucher, J. Ceja Acosta, and J. P. Mathews. 2000. Wetland manipulation in the Yalahau region of the northern Maya lowlands. Journal of Field Archaeology 27:131–152.
    • Holt, J. S., and A. B. Boose. 2000. Potential for spread of Abutilon theophrasti in California. Weed Science 48:43–52.
    • Kay, B. H., P. A. Ryan, B. M. Russell, J. S. Holt, S. A. Lyons, and P. N. Foley. 2000. The importance of subterranean mosquito habitat to arbovirus vector control strategies in north Queensland Australia. Journal of Medical Entomology 37:846–853.
    • Knick, S.T. & J.T. Rotenberry. 2000. Ghosts of habitats past: Contribution of landscape change to current habitats used by shrubland birds. Ecology, 81: 220-227.
    • Montalvo, A.M., N.C. Ellstrand. 2000. Transplantation of the subshrub Lotus scoparius : Testing the home-site advantage hypothesis. Conservation Biology, 14:1034- 1045.
    • Nunney, L. 2000. The limits to knowledge in conservation genetics: The value of effective population size. Evolutionary Biology, vol. 32: 179-194.
    • Osborne, K. H., and R. A. Redak. 2000. Microhabitat conditions associated with the distribution of postdiapause larvae of Euphydryas editha quino (Lepidoptera : Nymphalidae). Annals of the Entomological Society of America 93:110–114.
    • Padgett, P.E., S.N. Kee, E.B. Allen. 2000. The effects of irrigation on revegetation of semi-arid coastal sage scrub in southern California. Environmental Management, 26: 427 -435.
    • Redak, R. A. 2000. Arthropods and multispecies habitat conservation plans: Are we missing something? Environmental Management 26:S97–S107.
    • Regan, H. M., and M. Colyvan. 2000. Fuzzy sets and threatened species classification. Conservation Biology 14:1197–1199.
    • Regan, H. M., M. Colyvan, and M. A. Burgman. 2000. A proposal for fuzzy International Union for the Conservation of Nature (IUCN) categories and criteria. Biological Conservation 92:101–108.
    • Santiago, L. S. 2000. Use of coarse woody debris by the plant community of a Hawaiian montane cloud forest. Biotropica 32:633–641.
    • Santiago, L. S., G. Goldstein, F. C. Meinzer, J. H. Fownes, and D. Mueller-Dombois. 2000a. Transpiration and forest structure in relation to soil waterlogging in a Hawaiian montane cloud forest. Tree Physiology 20:673–681.
    • Santiago, L. S., T. S. Lau, P. J. Melcher, O. C. Steele, and G. Goldstein. 2000b. Morphological and physiological responses of Hawaiian Hibiscus tiliaceus populations to light and salinity. International Journal of Plant Sciences 161:99–106.
    • Scott, T.A., J.E. Sullivan. 2000. The selection and design of multiple-species habitat preserves. Environmental Management, 26: S37-S53.
    • Steinmaus, S. J., T. S. Prather, and J. S. Holt. 2000. Estimation of base temperatures for nine weed species. Journal of Experimental Botany 51:275–286.
    • Thompson, S. N., and R. A. Redak. 2000. Interactions of dietary protein and carbohydrate determine blood sugar level and regulate nutrient selection in the insect Manduca sexta L. Biochimica Et Biophysica Acta-General Subjects 1523:91–102.
  • 1999
    • Allen, M.F., L.M. Egerton-Warburton, E.B. Allen, et al. 1999. Mycorrhizae in Adenostoma fasciculatum Hook & Arn.: A combination of unusual ecto- and endo-forms. Mycorrhiza, 8: 225-228.
    • Bartsch, D., and N. C. Ellstrand. 1999. Genetic evidence for the origin of Californian wild beets (genus Beta). Theoretical and Applied Genetics 99:1120–1130.
    • Bartsch, D., J. Clegg, and N. C. Ellstrand. 1999a. Origin of wild beet and gene flow between Beta vulgaris and B-macrocarpa in California. Pages 269–274 Gene Flow and Agriculture: Relevance for Transgenic Crops. British Crop Protection Council, Farnham.
    • Bartsch, D., M. Lehnen, J. Clegg, M. Pohl-Orf, I. Schuphan, and N. C. Ellstrand. 1999b. Impact of gene flow from cultivated beet on genetic diversity of wild sea beet populations. Molecular Ecology 8:1733–1741.
    • Bearlin, A. R., M. A. Burgman, and H. M. Regan. 1999. A stochastic model for seagrass (Zostera muelleri) in Port Phillip Bay, Victoria, Australia. Ecological Modelling 118:131–148.
    • Boose, A. B., and J. S. Holt. 1999. Environmental effects on asexual reproduction in Arundo donax. Weed Research 39:117–127.
    • Burger, J.C., M.A. Patten, J.T. Rotenberry, R.A. Redak. 1999. Foraging ecology of the California gnatcatcher deduced from fecal samples. Oecologia, 120: 304-310.
    • Cybulski, S. M., and J. S. Holt. 1999a. Ab initio potential energy surfaces for He-Cl-2, Ne-Cl-2, and Ar-Cl-2. Journal of Chemical Physics 110:7745–7755.
    • Cybulski, S. M., and J. S. Holt. 1999b. Ab initio potential energy surfaces for He-Cl-2, Ne-Cl-2, and Ar-Cl-2. Journal of Chemical Physics 110:7745–7755.
    • Ellstrand, N.C., H.C. Prentice, J.F. Hancock. 1999. Gene flow and introgression from domesticated plants into their wild relatives. Annual Review of Ecology and Systematics, 30:539-563.
    • Gómez-Pompa, A., A. Kaus. 1999. From pre-Hispanic to future conservation alternatives: Lessons from Mexico. Proceedings of the National Academy of Sciences of the USA, 96(11):5982-5986.
    • Hegde, S. G., and N. C. Ellstrand. 1999. Life history differences between rare and common flowering plant species of California and the British Isles. International Journal of Plant Sciences 160:1083–1091.
    • Leydecker, A., J. O. Sickman, and J. M. Melack. 1999. Episodic lake acidification in the Sierra Nevada, California. Water Resources Research 35:2793–2804.
    • Padgett, P.E., E.B. Allen. 1999. Differential responses to nitrogen fertilization in native shrubs and exotic annuals common to Mediterranean coastal sage scrub of California. Plant Ecology, 144: 93-101.
    • Padgett, P.E., E.B. Allen, A. Bytnerowicz, et al. 1999. Changes in soil inorganic nitrogen as related to atmospheric nitrogenous pollutants in southern California. Atmospheric Environment, 33 (5): 769-781.
    • Regan, H. M., M. Colyvan, and M. A. Burgman. 1999. Dealing with vagueness in threatened species classification. (R. N. Dave and T. Sudkamp, Eds.). Ieee, New York.
    • Rillig, M.S., C.B. Field, M.F. Allen. 1999. Soil biota responses to long-term atmospheric CO2 enrichment in two California annual grasslands. Oecologia, 119: 572-577.
    • Stylinski, C.D., E.B. Allen. 1999. Lack of native species recovery following severe exotic disturbance in southern California shrublands. Journal of Applied Ecology, 36: 544-554.
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